MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-2-P5c

Family name MIR-2 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-2944a
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P2a  Tca-Mir-2-P2b  Tca-Mir-2-P3-v1  Tca-Mir-2-P4-v1  Tca-Mir-2-P5d  Tca-Mir-2-P5e  Tca-Mir-2-P7  Tca-Mir-2-P8 
Orthologues Cel-Mir-2-o5  Dan-Mir-2-P5  Dlo-Mir-2-P5  Dma-Mir-2-P5  Dme-Mir-2-P5  Dmo-Mir-2-P5  Dpu-Mir-2-P5  Dsi-Mir-2-P5  Dya-Mir-2-P5  Gpa-Mir-2-P5-v1  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG3: 15689938-15689994 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P5c)		 Mir-3841 LG3: 15689576-15689634 [+] Ensembl
Mir-3840 LG3: 15689698-15689754 [+] Ensembl
Mir-9-P9a LG3: 15689817-15689876 [+] Ensembl
Mir-2-P5c LG3: 15689938-15689994 [+] Ensembl
Mir-279-P1c LG3: 15690069-15690126 [+] Ensembl
Mir-3843 LG3: 15690171-15690228 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
GAUGUGUUUUCACAACUCGCUGAAACUGUGGAGGAACUAUUGGUGUGAUUUGUUCAUUUAAUCAUAUCACAGCCAUUAGUUACUUCACAGUUUCAGUAUUUUCUACACUGGAGUUAG
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Structure
        10          20        30        40         50       
GAUGUGUUUUCACAACUC--               G     U   -|     U  UUCA 
                    GCUGAAACUGUGGAG AACUA UGG UGUGAU UG    U
                    UGACUUUGACACUUC UUGAU ACC ACACUA AC    U
GAUUGAGGUCACAUCUUUUA               A     U   G^     U  UAAU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P5c_5p*
mirBase accessionMIMAT0018718
Sequence 
0- GAGGAACUAUUGGUGUGAUUUG -22
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Mature sequence

Tca-Mir-2-P5c_3p
mirBase accessionMIMAT0018719
Sequence 
34- UAUCACAGCCAUUAGUUACUUCA -57
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