Mir-2-P5

MirGeneDB ID

Dmo-Mir-2-P5

Family name

MIR-2 (all species)

Seed

AAGGAAC

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-5

Paralogues

Dmo-Mir-2-P1 Dmo-Mir-2-P2a Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dmo-Mir-2-P3b Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dmo-Mir-2-P6a Dmo-Mir-2-P6b Dmo-Mir-2-P6c Dmo-Mir-2-P7 Dmo-Mir-2-P8 Dmo-Mir-2-P9

Orthologues

Aae-Mir-2-P5a Aae-Mir-2-P5b Cel-Mir-2-o5 Dan-Mir-2-P5 Dme-Mir-2-P5 Dsi-Mir-2-P5 Dya-Mir-2-P5

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Dmoj_caf1)

scaffold_6496: 20936468-20936531 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P5)

Mir-2-P6c scaffold_6496: 20935964-20936029 [-] Ensembl
Mir-2-P6b scaffold_6496: 20936142-20936210 [-] Ensembl
Mir-2-P6a scaffold_6496: 20936318-20936375 [-] Ensembl
Mir-2-P5 scaffold_6496: 20936468-20936531 [-] Ensembl
Mir-9-P9 scaffold_6496: 20936638-20936694 [-] Ensembl
Mir-279-P2 scaffold_6496: 20936799-20936877 [-] Ensembl
Mir-3-P1 scaffold_6496: 20936995-20937055 [-] Ensembl
Mir-3-P2 scaffold_6496: 20937123-20937187 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUGCAAACUCGAUGAAUGGGCCAUGCGCUAAAAGGAACGAUCGUUGUGAUAUGCGUUAAUCGACCGUUACAUAUCACAGUGAUUUUCCUUUAUAGCGCGUGCAGUCCCCCAGACUACAAUAUGA

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Structure

        10        20          30         40        50        60 
AUGCAAACUCGAUGAAUG   --         -|      C               CGUUAAU 
                  GGC  CAUGCGCUA AAAGGAA GAUCGUUGUGAUAUG       C
                  CUG  GUGCGCGAU UUUCCUU UUAGUGACACUAUAC       G
AGUAUAACAUCAGACCCC   AC         A^      -               AUUGCCA 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em	Fe	Ma	Ma

Mature sequence

Dmo-Mir-2-P5_5p

mirBase accession

MIMAT0008691

Sequence

0- AAAGGAACGAUCGUUGUGAUAUG -23

Get sequence

Star sequence

Dmo-Mir-2-P5_3p*

mirBase accession

None

Sequence

41- UAUCACAGUGAUUUUCCUUUAUA -64

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