MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-2-P5

Family name MIR-2 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-2-P1-v1  Gpa-Mir-2-P2a  Gpa-Mir-2-P2b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gpa-Mir-2-P6  Gpa-Mir-2-P7  Gpa-Mir-2-P8  Gpa-Mir-2-P9 
Orthologues Aae-Mir-2-P5a  Aae-Mir-2-P5b  Aga-Mir-2-P5a1  Aga-Mir-2-P5a2  Aga-Mir-2-P5b  Cel-Mir-2-o5  Dan-Mir-2-P5  Dlo-Mir-2-P5  Dma-Mir-2-P5  Dme-Mir-2-P5  Dmo-Mir-2-P5  Dpu-Mir-2-P5  Dsi-Mir-2-P5  Dya-Mir-2-P5  Gsp-Mir-2  Ple-Mir-2  Tca-Mir-2-P5c  Tca-Mir-2-P5d  Tca-Mir-2-P5e 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(GpalI1)		 Scaffold26: 90896-90954 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P5-v1)		 Mir-3 Scaffold26: 89648-89709 [+] Ensembl
Mir-279-P1 Scaffold26: 90609-90682 [+] Ensembl
Mir-2-P5-v2 Scaffold26: 90894-90956 [+] Ensembl
Mir-2-P5-v1 Scaffold26: 90896-90954 [+] Ensembl
Mir-2-P6 Scaffold26: 93729-93811 [+] Ensembl
Variant

Gpa-Mir-2-P5-v1
Seed AAGGAAC
Precursor
(pre-Mir +30nt flank)		 
UUCUCAAUGAUAAGAGAAAUCUCUACAGUAAAAGGAACUAUCGUUGUGAUAUGUGGUUAGAAAUUAUAUCACAGUGAUUUUCCUUUAUAUUGCAAAGAUUUUUAUGCAACAAACAUUUU
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Structure
        10          20        30         40        50         
UUCUCAAUGAUAAGAGA--     CUA     -|      CU              UGGUU 
                   AAUCU   CAGUA AAAGGAA  AUCGUUGUGAUAUG     \
                   UUAGA   GUUAU UUUCCUU  UAGUGACACUAUAU     A
UUUUACAAACAACGUAUUU     AAC     A^      U-              UAAAG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Mature sequence

Gpa-Mir-2-P5-v1_5p
mirBase accessionNone
Sequence 
0- AAAGGAACUAUCGUUGUGAUAUG -23
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Star sequence

Gpa-Mir-2-P5-v1_3p*
mirBase accessionNone
Sequence 
36- UAUCACAGUGAUUUUCCUUUAUA -59
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Variant

Gpa-Mir-2-P5-v2
Seed AAAAGGA
Precursor
(pre-Mir +30nt flank)		 
GCUUCUCAAUGAUAAGAGAAAUCUCUACAGUAAAAGGAACUAUCGUUGUGAUAUGUGGUUAGAAAUUAUAUCACAGUGAUUUUCCUUUAUAUUGCAAAGAUUUUUAUGCAACAAACAUUUUAA
Get precursor sequence
Structure
        10          20        30         40        50        60 
GCUUCUCAAUGAUAAGA--       CUA     -|      CU            UGUGGUU 
                   GAAAUCU   CAGUA AAAGGAA  AUCGUUGUGAUA       \
                   UUUUAGA   GUUAU UUUCCUU  UAGUGACACUAU       A
AAUUUUACAAACAACGUAU       AAC     A^      U-            AUUAAAG 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Mature sequence

Gpa-Mir-2-P5-v2_5p
mirBase accessionNone
Sequence 
0- UAAAAGGAACUAUCGUUGUGAUA -23
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Star sequence

Gpa-Mir-2-P5-v2_3p* (predicted)
mirBase accessionNone
Sequence 
40- UCACAGUGAUUUUCCUUUAUAUU -63
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