MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-2-P1

Family name MIR-2 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-2-P2a  Gpa-Mir-2-P2b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gpa-Mir-2-P5-v1  Gpa-Mir-2-P6  Gpa-Mir-2-P7  Gpa-Mir-2-P8  Gpa-Mir-2-P9 
Orthologues Aae-Mir-2-P1-v1  Aga-Mir-2-P1-v1  Bge-Mir-2-P1-v1  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dlo-Mir-2-P1-v1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dmo-Mir-2-P1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dya-Mir-2-P1-v1  Gsp-Mir-2  Hme-Mir-2-P1-v1  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Ple-Mir-2  Tca-Mir-2-P1-v1 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(GpalI1)		 Scaffold379: 74466-74531 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1-v1)		 Mir-2-P2a Scaffold379: 73449-73516 [-] Ensembl
Mir-2-P1-v1 Scaffold379: 74466-74531 [-] Ensembl
Mir-2-P1-v2 Scaffold379: 74466-74531 [-] Ensembl
Variant

Gpa-Mir-2-P1-v1
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
CUAUUCCAUGAUACGAAGGCACUUUCAAUGUCAUCAAAAGGGGCUGUUGUAUGAUAUUUUUGCAUUCAUUAAGUAUCACAGCCAGCUUUGAUGAGCAUUGCAAAAAUACCGUUUAACCAACAAUUC
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Structure
        10        20         30         40        50        60  
CUAUUCCAUGAUACGAAGGCAC   -     -|       AGG      U   UGAUAUUUUU 
                      UUU CAAUG UCAUCAAA   GGCUGU GUA          G
                      AAA GUUAC AGUAGUUU   CCGACA UAU          C
CUUAACAACCAAUUUGCCAUAA   C     G^       CGA      C   GAAUUACUUA 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-2-P1-v1_5p*
mirBase accessionNone
Sequence 
0- UCAUCAAAAGGGGCUGUUGUA -21
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Mature sequence

Gpa-Mir-2-P1-v1_3p
mirBase accessionNone
Sequence 
45- UCACAGCCAGCUUUGAUGAGC -66
Get sequence
Variant

Gpa-Mir-2-P1-v2
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
CUAUUCCAUGAUACGAAGGCACUUUCAAUGUCAUCAAAAGGGGCUGUUGUAUGAUAUUUUUGCAUUCAUUAAGUAUCACAGCCAGCUUUGAUGAGCAUUGCAAAAAUACCGUUUAACCAACAAUUC
Get precursor sequence
Structure
        10        20         30         40        50        60  
CUAUUCCAUGAUACGAAGGCAC   -     -|       AGG      U    GAUAUUUUU 
                      UUU CAAUG UCAUCAAA   GGCUGU GUAU         G
                      AAA GUUAC AGUAGUUU   CCGACA UAUG         C
CUUAACAACCAAUUUGCCAUAA   C     G^       CGA      C    AAUUACUUA 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-2-P1-v2_5p*
mirBase accessionNone
Sequence 
0- UCAUCAAAAGGGGCUGUUGUAUG -23
Get sequence
Mature sequence

Gpa-Mir-2-P1-v2_3p
mirBase accessionNone
Sequence 
43- UAUCACAGCCAGCUUUGAUGAGC -66
Get sequence