MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-2-P1n

Family name MIR-2 (all species)
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-2-P1o  Csc-Mir-2-P2n  Csc-Mir-2-P2o  Csc-Mir-2-P3n  Csc-Mir-2-P3o  Csc-Mir-2-P4n  Csc-Mir-2-P4o 
Orthologues Aae-Mir-2-P1-v1  Aga-Mir-2-P1-v1  Bge-Mir-2-P1-v1  Dan-Mir-2-P1-v1  Dlo-Mir-2-P1-v1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dmo-Mir-2-P1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dya-Mir-2-P1-v1  Gpa-Mir-2-P1-v1  Gsp-Mir-2  Hme-Mir-2-P1-v1  Isc-Mir-2-P1  Ple-Mir-2  Tca-Mir-2-P1-v1 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Protostomia
Genome context
(GCF_000671375.1_CSC)		 NW_019384303.1: 1024581-1024642 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1n)		 Mir-71-P14 NW_019384303.1: 1024444-1024501 [+] Ensembl
Mir-2-P1n NW_019384303.1: 1024581-1024642 [+] Ensembl
Mir-2-P2n NW_019384303.1: 1024715-1024775 [+] Ensembl
Mir-2-P3n NW_019384303.1: 1024845-1024903 [+] Ensembl
Mir-2-P4n NW_019384303.1: 1025167-1025228 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UCAGUGUACGAUCCCGAUUCCCAGCGAAGCCAUCAAAGUGGUCGUGAAAUGUGUGAUAAAUCUUACUCAUAUCACAGCCACCUUUGAUGAGCUAAACUGAGGAAACAUCCGAAAUUCACGAA
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Structure
        10         20         30          40        50         
UCAGUGUACGAUCCCGA-    -   CGA   -       -|    C    A   UGUGAUA 
                  UUCC CAG   AGC CAUCAAA GUGGU GUGA AUG       A
                  AAGG GUC   UCG GUAGUUU CACCG CACU UAC       A
AAGCACUUAAAGCCUACA    A   AAA   A       C^    A    A   UCAUUCU 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma
Star sequence

Csc-Mir-2-P1n_5p*
mirBase accessionNone
Sequence 
0- CAUCAAAGUGGUCGUGAAAUG -21
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Mature sequence

Csc-Mir-2-P1n_3p
mirBase accessionNone
Sequence 
39- UAUCACAGCCACCUUUGAUGAGC -62
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