MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-2-P1

Family name MIR-2 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-2-P2a  Bge-Mir-2-P2b  Bge-Mir-2-P3-v1  Bge-Mir-2-P4-v1  Bge-Mir-2-P7 
Orthologues Aae-Mir-2-P1-v1  Aga-Mir-2-P1-v1  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dlo-Mir-2-P1-v1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dmo-Mir-2-P1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dya-Mir-2-P1-v1  Gpa-Mir-2-P1-v1  Gsp-Mir-2  Hme-Mir-2-P1-v1  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Ple-Mir-2  Tca-Mir-2-P1-v1 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Bger_2.0)		 KZ615136.1: 496135-496196 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1-v1)		 Mir-71 KZ615136.1: 496024-496084 [+] Ensembl
Mir-2-P1-v1 KZ615136.1: 496135-496196 [+] Ensembl
Mir-2-P1-v2 KZ615136.1: 496135-496196 [+] Ensembl
Mir-2-P2a KZ615136.1: 496274-496334 [+] Ensembl
Variant

Bge-Mir-2-P1-v1
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
GUUGUCACCGAGAAGUUGAGCAGUGUUCUGGCAUCAAAUCUGGUUUGUCAUAGAUUGCUUGAGUCCACUAUCACAGCCAGCUUUGAUGAGCAGAAAGUUGUCUCUAUAAUCUGUUGGAUCAC
Get precursor sequence
Structure
        10         20         30         40        50        60
GUUGUCACCGAGAAGUU-   -   UG     G-|      U      U  C    AUUGCU 
                  GAG CAG  UUCUG  CAUCAAA CUGGUU GU AUAG      U
                  CUC GUU  AAGAC  GUAGUUU GACCGA CA UAUC      G
CACUAGGUUGUCUAAUAU   U   GA     GA^      C      -  C    ACCUGA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-2-P1-v1_5p*
mirBase accessionNone
Sequence 
0- GCAUCAAAUCUGGUUUGUCAUAGA -24
Get sequence
Mature sequence

Bge-Mir-2-P1-v1_3p
mirBase accessionNone
Sequence 
38- UAUCACAGCCAGCUUUGAUGAGCA -62
Get sequence
Variant

Bge-Mir-2-P1-v2
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
GUUGUCACCGAGAAGUUGAGCAGUGUUCUGGCAUCAAAUCUGGUUUGUCAUAGAUUGCUUGAGUCCACUAUCACAGCCAGCUUUGAUGAGCAGAAAGUUGUCUCUAUAAUCUGUUGGAUCAC
Get precursor sequence
Structure
        10         20         30         40        50        60
GUUGUCACCGAGAAGUU-   -   UG     G-|      U      U  C   GAUUGCU 
                  GAG CAG  UUCUG  CAUCAAA CUGGUU GU AUA       U
                  CUC GUU  AAGAC  GUAGUUU GACCGA CA UAU       G
CACUAGGUUGUCUAAUAU   U   GA     GA^      C      -  C   CACCUGA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-2-P1-v2_5p*
mirBase accessionNone
Sequence 
0- GCAUCAAAUCUGGUUUGUCAUA -22
Get sequence
Mature sequence

Bge-Mir-2-P1-v2_3p
mirBase accessionNone
Sequence 
40- UCACAGCCAGCUUUGAUGAGCA -62
Get sequence