Mir-2-P1o

MirGeneDB ID

Csc-Mir-2-P1o

Family name

MIR-2 (all species)

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Csc-Mir-2-P1n Csc-Mir-2-P2n Csc-Mir-2-P2o Csc-Mir-2-P3n Csc-Mir-2-P3o Csc-Mir-2-P4n Csc-Mir-2-P4o

Orthologues

Aae-Mir-2-P1-v1 Aga-Mir-2-P1-v1 Bge-Mir-2-P1-v1 Dan-Mir-2-P1-v1 Dlo-Mir-2-P1-v1 Dma-Mir-2-P1 Dme-Mir-2-P1-v1 Dmo-Mir-2-P1 Dpu-Mir-2-P1 Dsi-Mir-2-P1-v1 Dya-Mir-2-P1-v1 Gpa-Mir-2-P1-v1 Gsp-Mir-2 Hme-Mir-2-P1-v1 Isc-Mir-2-P1 Ple-Mir-2 Tca-Mir-2-P1-v1

Node of Origin (locus)

C. sculpturatus

Node of Origin (family)

Protostomia

Genome context
(GCF_000671375.1_CSC)

NW_019384652.1: 447944-448006 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P1o)

Mir-2-P4o NW_019384652.1: 439498-439557 [-] Ensembl
Mir-2-P3o NW_019384652.1: 446579-446637 [-] Ensembl
Mir-2-P2o NW_019384652.1: 447782-447839 [-] Ensembl
Mir-2-P1o NW_019384652.1: 447944-448006 [-] Ensembl
Mir-71-P15 NW_019384652.1: 448162-448221 [-] Ensembl

Seed

CAUCAAA

Precursor
(pre-Mir +30nt flank)

UUUGAAUUUUAUUUCAUGGGUCUGGUAUAGCCAUCAAAGAGACUGUGAAAUGUGUAAUUUUAAAAGAACAUAUCACAGCCACCUUUGAUGAGCUGGACAAGAUCUUAUUUCUACAAUUACAAA

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Structure

        10         20        30         40         50        60
UUUGAAUUUUAUUUCAU-      G  A    -        AGA-|     A   UGUAAUU 
                  GGGUCU GU UAGC CAUCAAAG    CUGUGA AUG       U
                  UCUAGA CA GUCG GUAGUUUC    GACACU UAC       U
AAACAUUAACAUCUUUAU      A  G    A        CACC^     A   AAGAAAA 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Mature sequence

Csc-Mir-2-P1o_5p

mirBase accession

None

Sequence

0- CCAUCAAAGAGACUGUGAAAUG -22

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Star sequence

Csc-Mir-2-P1o_3p*

mirBase accession

None

Sequence

40- UAUCACAGCCACCUUUGAUGAGC -63

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