Mir-2-P1

MirGeneDB ID

Isc-Mir-2-P1

Family name

MIR-2 (all species)

Species

Deer tick (Ixodes scapularis)

MiRBase ID

isc-mir-2b

Paralogues

Isc-Mir-2-P3 Isc-Mir-2-P4

Orthologues

Aae-Mir-2-P1-v1 Aga-Mir-2-P1-v1 Bge-Mir-2-P1-v1 Csc-Mir-2-P1n Csc-Mir-2-P1o Dan-Mir-2-P1-v1 Dlo-Mir-2-P1-v1 Dma-Mir-2-P1 Dme-Mir-2-P1-v1 Dmo-Mir-2-P1 Dpu-Mir-2-P1 Dsi-Mir-2-P1-v1 Dya-Mir-2-P1-v1 Gpa-Mir-2-P1-v1 Gsp-Mir-2 Hme-Mir-2-P1-v1 Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Ple-Mir-2 Tca-Mir-2-P1-v1

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609884.1: 3130345-3130409 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P1)

Mir-71 NW_024609884.1: 3130205-3130267 [+] Ensembl
Mir-2-P1 NW_024609884.1: 3130345-3130409 [+] Ensembl
Mir-2-P3 NW_024609884.1: 3130575-3130635 [+] Ensembl
Mir-2-P4 NW_024609884.1: 3130738-3130797 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

CAACGGCCAGGCUAAUGUUUUCCUGUGCAGCCGUCAAAGGGACUGUGAAAUGUCUCCCUUCUUGGUCAGCAUAUCACAGCCACCUUUGAUGAGCUGUACACGAAUCGGACUCCUUCGAGGUGCAG

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Structure

        10          20        30         40         50        60 
CAACGGCCAGGCUAAUGUU--   C        -         GA-|     A   UCUCCCUU 
                     UUC UGUGCAGC CGUCAAAGG   CUGUGA AUG        \
                     AAG ACAUGUCG GUAGUUUCC   GACACU UAC        C
GACGUGGAGCUUCCUCAGGCU   C        A         ACC^     A   GACUGGUU 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Star sequence

Isc-Mir-2-P1_5p*

mirBase accession

None

Sequence

0- CCGUCAAAGGGACUGUGAAAUG -22

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Mature sequence

Isc-Mir-2-P1_3p

mirBase accession

MIMAT0012697

Sequence

41- UAUCACAGCCACCUUUGAUGAGCU -65

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