MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-71

Family name MIR-71 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(DMA_ASM399081)		 NC_046175.1: 11973451-11973516 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 NC_046175.1: 11973451-11973516 [+] Ensembl
Mir-2-P1 NC_046175.1: 11973585-11973670 [+] Ensembl
Mir-2-P2 NC_046175.1: 11973770-11973832 [+] Ensembl
Mir-2-P3 NC_046175.1: 11973888-11973956 [+] Ensembl
Mir-2-P4 NC_046175.1: 11974083-11974146 [+] Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
UUGCCGCGCAAUCCGUGAAAGGCAUCGGCGUGAAAGACAUGGGUAGUGAGAUGUUGGCGUGGUAGUUCCACACCUCUCACUACUUUGUCGUUCACGUUGCGCACUUUCCUGUUUCUUCGCUGUUUU
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Structure
        10          20         30        40        50        60   
UUGCCGCGCAAUCCGUG--    -| AU         A    U           U  UGGCGUGG 
                   AAAG GC  CGGCGUGAA GACA GGGUAGUGAGA GU        \
                   UUUC CG  GUUGCACUU CUGU UUCAUCACUCU CA        U
UUUUGUCGCUUCUUUGUCC    A^ C-         G    -           C  CACCUUGA 
    120       110       100         90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-71_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUGU -24
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Co-mature sequence

Dma-Mir-71_3p
mirBase accessionNone
Sequence 
43- CUCUCACUACUUUGUCGUUCACG -66
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