MirGeneDB 3.0
MirGeneDB ID

Ple-Mir-71

Family name MIR-71 (all species)
Species Thorny-headed worm 2 (Pomphorhynchus laevis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pdu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic)		 WNNJ02000478.1: 61293-61349 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 WNNJ02000478.1: 61293-61349 [+] Ensembl
Mir-2 WNNJ02000478.1: 61390-61446 [+] Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
CAAAAGUGGAUCGGUCUUGGUUUAUAGUGGUGAAAGACAUGGGUAGCAAGAUCAGACAGUAUGGUCUCAUCACCCAUAUCUUUCUCCACUCUGCCAGGACUAGCAAACGUCUUAGUU
Get precursor sequence
Structure
        10            20        30        40        50        
CAAAAGUGGAUCGGUCU----|   UUAU     U      C      AGCA    CAGAC 
                     UGGU    AGUGG GAAAGA AUGGGU    AGAU     \
                     ACCG    UCACC CUUUCU UACCCA    UCUG     A
UUGAUUCUGCAAACGAUCAGG^   UC--     U      A      CUAC    GUAUG 
     110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To To To
Mature sequence

Ple-Mir-71_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGCAAGAU -22
Get sequence
Star sequence

Ple-Mir-71_3p*
mirBase accessionNone
Sequence 
35- CUCAUCACCCAUAUCUUUCUCC -57
Get sequence