MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-71-P3

Family name MIR-71 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-71-P1  Efe-Mir-71-P2 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sme-Mir-71-o3  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) E. fetida
Node of Origin (family) Nephrozoa
Genome context
(Efe_combined)		 Efet.01.126385: 1893-1951 [+]
Clustered miRNAs
(< 50kb from Mir-71-P3)		 Mir-71-P3 Efet.01.126385: 1893-1951 [+]
Mir-2-P12f Efet.01.126385: 2777-2840 [+]
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
UGAGGAGAUGAAGGUUGGGACUUGACUUCAUGAAAGACAGGGUAGUGAGAUGCUUUGGUCAAGUUCAUCUUGUUGCCUUGUCCUUCUUGAAGUCUGUUUCUUUCUACCACUCUCUGUUA
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Structure
        10           20        30        40        50         
UGAGGAGAUGAAGGUUG---|   UU       U   A          UG     CUUUGG 
                    GGAC  GACUUCA GAA GACAGGGUAG  AGAUG      \
                    UUUG  CUGAAGU CUU CUGUUCCGUU  UCUAC      U
AUUGUCUCUCACCAUCUUUC^   U-       U   C          GU     UUGAAC 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Efe-Mir-71-P3_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAGGGUAGUGAGAUG -22
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Star sequence

Efe-Mir-71-P3_3p*
mirBase accessionNone
Sequence 
37- UCUUGUUGCCUUGUCCUUCUUG -59
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