Mir-71

MirGeneDB ID

Aae-Mir-71

Family name

MIR-71 (all species)

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-71

Paralogues

Orthologues

Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Ava-Mir-71-P20 Ava-Mir-71-P21 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Csc-Mir-71-P14 Csc-Mir-71-P15 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Efe-Mir-71-P2 Efe-Mir-71-P3 Egr-Mir-71 Esc-Mir-71 Gsa-Mir-71-o7 Gsa-Mir-71-o8 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lan-Mir-71-P5 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pcr-Mir-71-v1 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Sma-Mir-71-o5 Sma-Mir-71-o6 Sme-Mir-71-o1a Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 Tur-Mir-71-P6a Tur-Mir-71-P6b War-Mir-71

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Aaeg_L3)

supercont1.268: 889383-889449 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-71)

Mir-2-P4-v1 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P4-v2 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P3 supercont1.268: 888595-888663 [-] Ensembl
Mir-2-P2b supercont1.268: 888744-888807 [-] Ensembl
Mir-2-P1-v1 supercont1.268: 889091-889155 [-] Ensembl
Mir-2-P1-v2 supercont1.268: 889091-889155 [-] Ensembl
Mir-71 supercont1.268: 889383-889449 [-] Ensembl

Seed

GAAAGAC

Precursor
(pre-Mir +30nt flank)

CUCCUCCUAUCGGUACGGUAUUUGGCGGCAAGAAAGACAUGGGUAGUGAGAUAGUUUCACCCUAUUGCACUGGGAUCUCACUACCUUGUCUUUCAUGCUGAUGAAUACAUAAUUUUGCGCGAAAGCG

Get precursor sequence

Structure

        10          20        30        40        50        60   
CUCCUCCUAUCGGUACG--|     GG     A        U            AGUUUCACCC 
                   GUAUUU  CGGCA GAAAGACA GGGUAGUGAGAU          U
                   CAUAAG  GUCGU CUUUCUGU UCCAUCACUCUA          A
GCGAAAGCGCGUUUUAAUA^     UA     A        -            GGGUCACGUU 
     120       110       100        90         80        70