MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-71-o4

Family name MIR-71 (all species)
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2167
Paralogues Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000025_dd_Smes_g4_25: 5887508-5887571 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-o4)		 Mir-71-o4 NNSW01000025_dd_Smes_g4_25: 5887508-5887571 [+] UCSC Ensembl
Mir-2-o127 NNSW01000025_dd_Smes_g4_25: 5887622-5887680 [+] UCSC Ensembl
Mir-2-o128 NNSW01000025_dd_Smes_g4_25: 5887731-5887790 [+] UCSC Ensembl
Seed GUGUUAA
Precursor
(pre-Mir +30nt flank)		 
CAAAUUGAAUUGUGAAUGCAAUUCUAUCUUUGAAAGACAAGUCUUAUACAUUCUUAGUGUCAAACAUCCAAGUGUGUUAAGCUGGUCUUUCAGAGCAUGAAUUCGUUAAUCGUCAAAUGUUUAA
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Structure
        10          20        30        40         50        60 
CAAAUUGAAUUGUGAAU-  -|    UAU           A  U    -      CUUAGUGU 
                  GC AAUUC   CUUUGAAAGAC AG CUUA UACAUU        C
                  UG UUAAG   GAGACUUUCUG UC GAAU GUGUGA        A
AAUUUGUAAACUGCUAAU  C^    UAC           G  -    U      ACCUACAA 
  120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-71-o4_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGAAAGACAAGUCUUAUACAUU -22
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Mature sequence

Sme-Mir-71-o4_3p
mirBase accessionMIMAT0011264
Sequence 
42- UGUGUUAAGCUGGUCUUUCAGA -64
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