Mir-71-o1a

MirGeneDB ID

Sme-Mir-71-o1a

Family name

MIR-71 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-71a-1

Paralogues

Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Nephrozoa

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000035_dd_Smes_g4_35: 577784-577841 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-71-o1a)

Mir-71-o1a NNSW01000035_dd_Smes_g4_35: 577784-577841 [+] UCSC Ensembl
Mir-2-o122a NNSW01000035_dd_Smes_g4_35: 577882-577946 [+] UCSC Ensembl

Seed

GAAAGAC

Precursor
(pre-Mir +30nt flank)

GUGAAUUUAAUUCAAUUUUAAAUGCAUGAAUGAAAGACACGGGUAGUGAGAUAAGCUAUAUAUCAUCUCAUUGCCAAUGUCUUUUAAACGUGUUAUUUAACGAUCGUAAUAUCAGUUC

Get precursor sequence

Structure

        10         20         30        40        50        
GUGAAUUUAAUUCAAUU-      -|    AA         CG           AAGCU 
                  UUAAAU GCAUG  UGAAAGACA  GGUAGUGAGAU     A
                  AAUUUA UGUGC  AUUUUCUGU  CCGUUACUCUA     U
CUUGACUAUAAUGCUAGC      U^    AA         AA           CUAUA 
      110       100        90        80        70        60