MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-71

Family name MIR-71 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000003.1: 67085298-67085356 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 JAPTHN010000003.1: 67085298-67085356 [+] Ensembl
Mir-2-o25-v1 JAPTHN010000003.1: 67086277-67086336 [+] Ensembl
Mir-2-o25-v2 JAPTHN010000003.1: 67086277-67086337 [+] Ensembl
Mir-2-P12 JAPTHN010000003.1: 67087096-67087160 [+] Ensembl
Mir-2-o26 JAPTHN010000003.1: 67087490-67087548 [+] Ensembl
Mir-2-o27 JAPTHN010000003.1: 67087901-67087958 [+] Ensembl
Mir-2-o28 JAPTHN010000003.1: 67088098-67088157 [+] Ensembl
Mir-2-o29 JAPTHN010000003.1: 67088403-67088463 [+] Ensembl
Mir-2-o30 JAPTHN010000003.1: 67088840-67088898 [+] Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
UUCGAGAGGAUUUGAAGGUCUUGAGCCCGUUGAAAGACAUGGGUAGUGAGAUGGAGAGAAAGAAACAGCUCGCUACCCUGUCUUUCCAGGGGACAGACCAAUUUGCUGGUGGCGCACCC
Get precursor sequence
Structure
        10            20        30        40        50         
UUCGAGAGGAUUUGAAG----|   U AG   GUU        U          A  GAGAG 
                     GUCU G  CCC   GAAAGACA GGGUAGUGAG UG     A
                     CAGA C  GGG   CUUUCUGU CCCAUCGCUC AC     A
CCCACGCGGUGGUCGUUUAAC^   - AG   AC-        -          G  AAAGA 
       110       100         90         80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-71_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Star sequence

Pdu-Mir-71_3p*
mirBase accessionNone
Sequence 
37- GCUCGCUACCCUGUCUUUCCAG -59
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