Mir-71-P13

MirGeneDB ID

Lpo-Mir-71-P13

Family name

MIR-71 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668542.1: 80832-80891 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-71-P13)

Mir-71-P13 NW_013668542.1: 80832-80891 [+] Ensembl
Mir-2-P1m NW_013668542.1: 81176-81238 [+] Ensembl
Mir-2-P2m NW_013668542.1: 83483-83542 [+] Ensembl
Mir-2-P3m NW_013668542.1: 87725-87786 [+] Ensembl

Seed

CUCACUA

Precursor
(pre-Mir +30nt flank)

GGUCUAUUAUUACAGCUUACUUUUUCUCUGUGAAAGACAUGGGUAGUGAGAUGUGGUUAAGGUAAUCAUCUCACUACCUUGUCUUUGACGGAGAGGGCGUUAUGUAUCACGGAGGAUGAG

Get precursor sequence

Structure

        10          20        30        40        50          
GGUCUAUUAUUACAGCUU--| U          G       U             UGGUUA 
                    AC UUUUCUCUGU AAAGACA GGGUAGUGAGAUG      \
                    UG GGGAGAGGCA UUUCUGU UCCAUCACUCUAC      A
GAGUAGGAGGCACUAUGUAU^ C          G       -             UAAUGG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-71-P13_5p*

mirBase accession

None

Sequence

0- UGAAAGACAUGGGUAGUGAGAUG -23

Get sequence

Mature sequence

Lpo-Mir-71-P13_3p

mirBase accession

None

Sequence

38- UCUCACUACCUUGUCUUUGACG -60

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