Mir-2-P12

MirGeneDB ID

Pdu-Mir-2-P12

Family name

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-2-o25-v1 Pdu-Mir-2-o26 Pdu-Mir-2-o27 Pdu-Mir-2-o28 Pdu-Mir-2-o29 Pdu-Mir-2-o30 Pdu-Mir-2-o31 Pdu-Mir-2-o32 Pdu-Mir-2-o33 Pdu-Mir-2-o34 Pdu-Mir-2-o35

Orthologues

Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Cte-Mir-2-P12 Dgr-Mir-2-P12 Efe-Mir-2-P12f Efe-Mir-2-P12g Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d Lgi-Mir-2-P12e Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Protostomia

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000003.1: 67087096-67087160 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P12)

Mir-71 JAPTHN010000003.1: 67085298-67085356 [+] Ensembl
Mir-2-o25-v1 JAPTHN010000003.1: 67086277-67086336 [+] Ensembl
Mir-2-o25-v2 JAPTHN010000003.1: 67086277-67086337 [+] Ensembl
Mir-2-P12 JAPTHN010000003.1: 67087096-67087160 [+] Ensembl
Mir-2-o26 JAPTHN010000003.1: 67087490-67087548 [+] Ensembl
Mir-2-o27 JAPTHN010000003.1: 67087901-67087958 [+] Ensembl
Mir-2-o28 JAPTHN010000003.1: 67088098-67088157 [+] Ensembl
Mir-2-o29 JAPTHN010000003.1: 67088403-67088463 [+] Ensembl
Mir-2-o30 JAPTHN010000003.1: 67088840-67088898 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

AUGGUGCUGAGAUGAUUACUAGUGUCGCUGCGGUCCAAGUGGUUGAGAUAGCUGUUUUCUCUAAACUGGGGUAUCACAGCCUUGCUUGGAUCAUAGCGACACUCAGAAAGACUGUGUCUCAGGUG

Get precursor sequence

Structure

        10         20         30        40          50        60 
AUGGUGCUGAGAUGAUUA-  -          C         --|    A    G UGUUUUCU 
                   CU AGUGUCGCUG GGUCCAAGU  GGUUG GAUA C        \
                   GA UCACAGCGAU CUAGGUUCG  CCGAC CUAU G        C
GUGGACUCUGUGUCAGAAA  C          A         UU^    A    G GGUCAAAU 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Star sequence

Pdu-Mir-2-P12_5p*

mirBase accession

None

Sequence

0- CGGUCCAAGUGGUUGAGAUAGC -22

Get sequence

Mature sequence

Pdu-Mir-2-P12_3p

mirBase accession

None

Sequence

41- UAUCACAGCCUUGCUUGGAUCAUA -65

Get sequence