Mir-2-P12f

MirGeneDB ID

Mom-Mir-2-P12f

Family name

Species

MiRBase ID

Paralogues

Mom-Mir-2-o85-v1 Mom-Mir-2-o86 Mom-Mir-2-o88 Mom-Mir-2-o89 Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k

Orthologues

Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Cte-Mir-2-P12 Dgr-Mir-2-P12 Efe-Mir-2-P12f Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

Polyplacophora

Node of Origin (family)

Protostomia

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010082610.1: 4203-4260 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P12f)

Mir-2-P12g JARFOD010082610.1: 1081-1137 [+] Ensembl
Mir-2-P12h JARFOD010082610.1: 1295-1352 [+] Ensembl
Mir-2-P12i JARFOD010082610.1: 1780-1835 [+] Ensembl
Mir-2-P12j JARFOD010082610.1: 1936-1992 [+] Ensembl
Mir-2-P12f JARFOD010082610.1: 4203-4260 [+] Ensembl
Mir-2-P12k JARFOD010082610.1: 4334-4391 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

ACUGAGAAAUGCUUAUUGGUGAUGAUAACUCUGACGAAGUGGUUGUGGUCUGUGGUUUGUCAUUCAUAUCACAGCUGCUUGGAUCAGUGUUGCUGUAAUCGGUCUCUACGGUAAAUCU

Get precursor sequence

Structure

        10         20        30         40        50        
ACUGAGAAAUGCUUAUU-   G  GA    U    CG-|  UG        C  UGGUU 
                  GGU AU  UAAC CUGA   AAG  GUUGUGGU UG     U
                  CUA UG  GUUG GACU   UUC  CGACACUA AC     G
UCUAAAUGGCAUCUCUGG   A  UC    U    AGG^  GU        U  UUACU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Mom-Mir-2-P12f_5p* (predicted)

mirBase accession

None

Sequence

0- CUGACGAAGUGGUUGUGGUCUG -22

Get sequence

Mature sequence

Mom-Mir-2-P12f_3p (predicted)

mirBase accession

None

Sequence

36- UAUCACAGCUGCUUGGAUCAGU -58

Get sequence