MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-2-P12

Family name MIR-2 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-2-o56  Mgi-Mir-2-o57  Mgi-Mir-2-o58a  Mgi-Mir-2-o58b  Mgi-Mir-2-o59  Mgi-Mir-2-o60  Mgi-Mir-2-o61  Mgi-Mir-2-o62 
Orthologues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Cte-Mir-2-P12  Dgr-Mir-2-P12  Efe-Mir-2-P12f  Efe-Mir-2-P12g  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lgi-Mir-2-P12a  Lgi-Mir-2-P12b  Lgi-Mir-2-P12c  Lgi-Mir-2-P12d  Lgi-Mir-2-P12e  Lhy-Mir-2-P12  Llo-Mir-2-P12  Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Npo-Mir-2-P12  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Pdu-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  Rph-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold602: 445140-445196 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P12)		 Mir-71 scaffold602: 444840-444896 [+] Ensembl
Mir-2-o56 scaffold602: 445001-445057 [+] Ensembl
Mir-2-P12 scaffold602: 445140-445196 [+] Ensembl
Mir-2-o57 scaffold602: 445414-445474 [+] Ensembl
Mir-2-o58b scaffold602: 445724-445782 [+] Ensembl
Mir-2-o59 scaffold602: 445843-445901 [+] Ensembl
Mir-2-o60 scaffold602: 446019-446076 [+] Ensembl
Mir-2-o61 scaffold602: 446534-446592 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
CUUGUUAUCCUGAGAUGCAGAGUUCCUGUGCUGACUAAGUGGCUGUGAUGUAUCAUUUACUUAUAUCACAGCCUGCUUGGAUCAGUACAGUGUUCUGCUUGGUCAACAGAGCCUGUU
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Structure
        10           20        30         40         50       
CUUGUUAUCCUGAGAUG---     UUC         -      -|           UCAU 
                    CAGAG   CUGUGCUGA CUAAGU GGCUGUGAUGUA    \
                    GUCUU   GACAUGACU GGUUCG CCGACACUAUAU    U
UUGUCCGAGACAACUGGUUC     GU-         A      U^           UCAU 
     110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-2-P12_5p*
mirBase accessionNone
Sequence 
0- CUGACUAAGUGGCUGUGAUGUA -22
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Mature sequence

Mgi-Mir-2-P12_3p
mirBase accessionNone
Sequence 
33- UAUCACAGCCUGCUUGGAUCAGUA -57
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