Mir-2-P12h

MirGeneDB ID

Mom-Mir-2-P12h

Family name

Species

MiRBase ID

Paralogues

Mom-Mir-2-o85-v1 Mom-Mir-2-o86 Mom-Mir-2-o88 Mom-Mir-2-o89 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k

Orthologues

Cte-Mir-2-P12 Dgr-Mir-2-P12 Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

M. mucosa

Node of Origin (family)

Protostomia

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010082610.1: 1295-1352 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P12h)

Mir-2-P12g JARFOD010082610.1: 1081-1137 [+] Ensembl
Mir-2-P12h JARFOD010082610.1: 1295-1352 [+] Ensembl
Mir-2-P12i JARFOD010082610.1: 1780-1835 [+] Ensembl
Mir-2-P12j JARFOD010082610.1: 1936-1992 [+] Ensembl
Mir-2-P12f JARFOD010082610.1: 4203-4260 [+] Ensembl
Mir-2-P12k JARFOD010082610.1: 4334-4391 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

CUAUUUUGUUUCUUGAACUCCAUUCCAUACUGGCUAAGUGUCUGUGAUGUGUUUUAGUUCUAUCAUAUCACAGUCUGCUUAGAUCAGUAUGGUAUGUUGUGUAAUUCAGCCUUCAAAA

Get precursor sequence

Structure

        10          20        30         40         50       
CUAUUUUGUUUCUUGAA-- UC   U         -      GU-|         UUUUA 
                   C  CAU CCAUACUGG CUAAGU   CUGUGAUGUG     G
                   G  GUA GGUAUGACU GAUUCG   GACACUAUAC     U
AAAACUUCCGACUUAAUGU UU   U         A      UCU^         UAUCU 
      110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

Tissue expression

To

Star sequence

Mom-Mir-2-P12h_5p* (predicted)

mirBase accession

None

Sequence

0- UGGCUAAGUGUCUGUGAUGUG -21

Get sequence

Mature sequence

Mom-Mir-2-P12h_3p (predicted)

mirBase accession

None

Sequence

35- UAUCACAGUCUGCUUAGAUCAGU -58

Get sequence