MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-2-o62

Family name MIR-2 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-2-o56  Mgi-Mir-2-o57  Mgi-Mir-2-o58a  Mgi-Mir-2-o58b  Mgi-Mir-2-o59  Mgi-Mir-2-o60  Mgi-Mir-2-o61  Mgi-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold1503: 13873-13931 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o62)		 Mir-2-o62 scaffold1503: 13873-13931 [-] Ensembl
Mir-2-o58a scaffold1503: 15162-15221 [-] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
ACAUGGAUAGUGGAAAUGUGUGGUGUGGACCAAUCAAAGUUGUUGUGAUGUGUGAGUUACUGACCAUAUCACAGCACGCUUUGAUGGCUUCACAGACCCACAAAAGCUACCUGACAGAG
Get precursor sequence
Structure
        10        20            30        40         50        
ACAUGGAUAGUGGAAAUGU    ---      -|  A       -            UGAGU 
                   GUGG   UGUGGA CCA UCAAAGU UGUUGUGAUGUG     U
                   CACC   ACACUU GGU AGUUUCG ACGACACUAUAC     A
GAGACAGUCCAUCGAAAA-    CAG      C^  -       C            CAGUC 
       110        100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-2-o62_5p*
mirBase accessionNone
Sequence 
0- CAAUCAAAGUUGUUGUGAUGUG -22
Get sequence
Mature sequence

Mgi-Mir-2-o62_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCACGCUUUGAUGGCU -59
Get sequence