Mir-2-P12d

MirGeneDB ID

Lgi-Mir-2-P12d

Family name

MIR-2 (all species)

Species

Owl limpet (Lottia gigantea)

MiRBase ID

Paralogues

Lgi-Mir-2-o50 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12e

Orthologues

Agr-Mir-2-P12d Cte-Mir-2-P12 Dgr-Mir-2-P12 Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

L. gigantea

Node of Origin (family)

Protostomia

Genome context
(Lotgi1)

LOTGIsca_2: 4514607-4514668 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P12d)

Mir-2-P12e LOTGIsca_2: 4514299-4514357 [-] Ensembl
Mir-2-P12d LOTGIsca_2: 4514607-4514668 [-] Ensembl
Mir-2-P12c LOTGIsca_2: 4514962-4515022 [-] Ensembl
Mir-2-P12b LOTGIsca_2: 4515157-4515217 [-] Ensembl
Mir-71 LOTGIsca_2: 4515804-4515862 [-] Ensembl
Mir-2-P12a LOTGIsca_2: 4520083-4520141 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

AAAGUUGUUUGUAGAAGGUCAGCUACCCUUCUGACUAAGUGGCUGUGAUAAGUUUAAAAUCAUAGUCUUAUCACAGCCUGCUUAGAUCAGCAUAGAUUCUGACGUACCCUGCUAUUUCUACA

Get precursor sequence

Structure

        10          20        30         40         50         
AAAGUUGUUUGUAGAAG--     CUACCCUU    -      -|           UUUAAA 
                   GUCAG        CUGA CUAAGU GGCUGUGAUAAG      A
                   CAGUC        GACU GAUUCG CCGACACUAUUC      U
ACAUCUUUAUCGUCCCAUG     UUAGAUAC    A      U^           UGAUAC 
120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Lgi-Mir-2-P12d_5p* (predicted)

mirBase accession

None

Sequence

0- CUGACUAAGUGGCUGUGAUAAG -22

Get sequence

Mature sequence

Lgi-Mir-2-P12d_3p

mirBase accession

None

Sequence

38- UAUCACAGCCUGCUUAGAUCAGCA -62

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