Mir-2-P2b

MirGeneDB ID

Aae-Mir-2-P2b

Family name

MIR-2 (all species)

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-13

Paralogues

Aae-Mir-2-P1-v1 Aae-Mir-2-P3 Aae-Mir-2-P4-v1 Aae-Mir-2-P5a Aae-Mir-2-P5b Aae-Mir-2-P7 Aae-Mir-2-P8

Orthologues

Aga-Mir-2-P2b Bge-Mir-2-P2b Dan-Mir-2-P2b1 Dan-Mir-2-P2b2 Dlo-Mir-2-P2b Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Gpa-Mir-2-P2b Gsp-Mir-2 Hme-Mir-2-P2b Ple-Mir-2 Tca-Mir-2-P2b

Node of Origin (locus)

Neoptera

Node of Origin (family)

Protostomia

Genome context
(Aaeg_L3)

supercont1.268: 888744-888807 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2b)

Mir-2-P4-v1 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P4-v2 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P3 supercont1.268: 888595-888663 [-] Ensembl
Mir-2-P2b supercont1.268: 888744-888807 [-] Ensembl
Mir-2-P1-v1 supercont1.268: 889091-889155 [-] Ensembl
Mir-2-P1-v2 supercont1.268: 889091-889155 [-] Ensembl
Mir-71 supercont1.268: 889383-889449 [-] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

AACCAGAACCUGUGUCCAGUCGUGAUCGGAUCGUAAAAAUGGUUGUGCUGUGUUGUUACGCUCGAAAUUCAUAUCACAGCCAUUUUGACGAGUUCGAUCCUGGAUCGUUAUAGUCGCCUUCGUC

Get precursor sequence

Structure

        10          20        30         40        50        60 
AACCAGAACCUGUGUCCAG--   U       -|   A            C    UUGUUACG 
                     UCG GAUCGGA UCGU AAAAUGGUUGUG UGUG        \
                     GGU CUAGCUU AGCA UUUUACCGACAC AUAC        C
CUGCUUCCGCUGAUAUUGCUA   C       G^   G            U    UUAAAGCU 
  120       110       100        90        80        70