MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-2-P2b

Family name MIR-2 (all species)
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-13b
Paralogues Aga-Mir-2-P1-v1  Aga-Mir-2-P2a  Aga-Mir-2-P3  Aga-Mir-2-P4-v1  Aga-Mir-2-P5a1  Aga-Mir-2-P5a2  Aga-Mir-2-P5b  Aga-Mir-2-P7  Aga-Mir-2-P8 
Orthologues Aae-Mir-2-P2b  Bge-Mir-2-P2b  Dan-Mir-2-P2b1  Dan-Mir-2-P2b2  Dlo-Mir-2-P2b  Dma-Mir-2-o2  Dma-Mir-2-P2  Dme-Mir-2-P2b1  Dme-Mir-2-P2b2  Dmo-Mir-2-P2b1  Dmo-Mir-2-P2b2  Dpu-Mir-2-o2  Dpu-Mir-2-P2  Dsi-Mir-2-P2b1  Dsi-Mir-2-P2b2  Dya-Mir-2-P2b1  Dya-Mir-2-P2b2  Gpa-Mir-2-P2b  Gsp-Mir-2  Hme-Mir-2-P2b  Ple-Mir-2  Tca-Mir-2-P2b 
Node of Origin (locus) Neoptera
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064601.1: 106556743-106556806 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P2b)
Mir-2-P4-v1 NC_064601.1: 106556282-106556351 [-] Ensembl
Mir-2-P4-v2 NC_064601.1: 106556284-106556349 [-] Ensembl
Mir-2-P3 NC_064601.1: 106556572-106556654 [-] Ensembl
Mir-2-P2b NC_064601.1: 106556743-106556806 [-] Ensembl
Mir-2-P2a NC_064601.1: 106557252-106557346 [-] Ensembl
Mir-2-P1-v1 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-2-P1-v2 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-71 NC_064601.1: 106558703-106558794 [-] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)
GUGGAAAAACAGGGGCUGCUCGUGGUCAGGUCGUAAAAAUGGUUGUGCCGUGUCGAUUUAAGAAAAGUUCAUAUCACAGCCAUUUUGACGAGUUUGACCACUCUUGAGCAAUGUACAGCGUGGG
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Structure
        10        20          30         40        50        60 
GUGGAAAAACAGGGGCUGCUC--         -|   A            CC   UCGAUUUA 
                       GUGGUCAGG UCGU AAAAUGGUUGUG  GUG        \
                       CACCAGUUU AGCA UUUUACCGACAC  UAC        A
GGGUGCGACAUGUAACGAGUUCU         G^   G            UA   UUGAAAAG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-2-P2b_5p*

mirBase accessionNone
Sequence
0- UCGUAAAAAUGGUUGUGCCGUG -22
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Mature sequence

Aga-Mir-2-P2b_3p

mirBase accessionMIMAT0001502
Sequence
41- UAUCACAGCCAUUUUGACGAGUU -64
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