MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-2-P1

Family name MIR-2 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-2-3
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P2a  Tca-Mir-2-P2b  Tca-Mir-2-P3-v1  Tca-Mir-2-P4-v1  Tca-Mir-2-P5c  Tca-Mir-2-P5d  Tca-Mir-2-P5e  Tca-Mir-2-P7  Tca-Mir-2-P8 
Orthologues Aae-Mir-2-P1-v1  Aga-Mir-2-P1-v1  Bge-Mir-2-P1-v1  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dlo-Mir-2-P1-v1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dmo-Mir-2-P1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dya-Mir-2-P1-v1  Gpa-Mir-2-P1-v1  Gsp-Mir-2  Hme-Mir-2-P1-v1  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Ple-Mir-2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG3: 560833-560889 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1-v2)		 Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2a LG3: 560954-561011 [+] Ensembl
Mir-2-P2b LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl
Variant

Tca-Mir-2-P1-v2
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UGCCUGGAUUGUCUCGAGUCUUGUCUGUCCUUAUCAGAGUUGGCGGUUUUAGAUUAACUGAUUCUAUCACAGCCAGCUUUGAUGAGCACAGUUGAGAUUCAUAACAUCACACCCUGG
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Structure
        10          20        30        40        50        
UGCCUGGAUUGUCUCGA--|     U    C               G  UU    UUAA 
                   GUCUUG CUGU CUUAUCAGAGUUGGC GU  UAGA    \
                   UAGAGU GACA GAGUAGUUUCGACCG CA  AUCU    C
GGUCCCACACUACAAUACU^     U    C               A  CU    UAGU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P1-v2_5p*
mirBase accessionMIMAT0019093
Sequence 
0- UUAUCAGAGUUGGCGGUUUUAGA -23
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Mature sequence

Tca-Mir-2-P1-v2_3p
mirBase accessionMIMAT0008353
Sequence 
34- UAUCACAGCCAGCUUUGAUGAGC -57
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Variant

Tca-Mir-2-P1-v1
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
AUGCCUGGAUUGUCUCGAGUCUUGUCUGUCCUUAUCAGAGUUGGCGGUUUUAGAUUAACUGAUUCUAUCACAGCCAGCUUUGAUGAGCACAGUUGAGAUUCAUAACAUCACACCCUGGA
Get precursor sequence
Structure
        10          20        30        40        50         
AUGCCUGGAUUGUCUCG--|      U    C               G  UU  GAUUAA 
                   AGUCUUG CUGU CUUAUCAGAGUUGGC GU  UA      \
                   UUAGAGU GACA GAGUAGUUUCGACCG CA  AU      C
AGGUCCCACACUACAAUAC^      U    C               A  CU  CUUAGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P1-v1_5p*
mirBase accessionMIMAT0019093
Sequence 
0- CUUAUCAGAGUUGGCGGUUUUA -22
Get sequence
Mature sequence

Tca-Mir-2-P1-v1_3p
mirBase accessionMIMAT0008353
Sequence 
37- UCACAGCCAGCUUUGAUGAGCA -59
Get sequence