Mir-2-P3b

MirGeneDB ID

Dsi-Mir-2-P3b

Family name

MIR-2 (all species)

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-2b-2

Paralogues

Dsi-Mir-2-P1-v1 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dsi-Mir-2-P3a Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P5 Dsi-Mir-2-P6a Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P7 Dsi-Mir-2-P8 Dsi-Mir-2-P9-v1

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Cbr-Mir-2-o3 Cel-Mir-2-o3 Dan-Mir-2-P3b Dlo-Mir-2-P3-v1 Dma-Mir-2-P3 Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dya-Mir-2-P3b Gpa-Mir-2-P3b Gsp-Mir-2 Hme-Mir-2-P3-v1 Isc-Mir-2-P3 Ple-Mir-2 Tca-Mir-2-P3-v1

Node of Origin (locus)

Glossinidae + Drosophilidae

Node of Origin (family)

Protostomia

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2L: 19065872-19065940 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3b)

Mir-2-P4b-v1 2L: 19065170-19065229 [-] UCSC Ensembl
Mir-2-P4b-v2 2L: 19065170-19065229 [-] UCSC Ensembl
Mir-2-P4a-v1 2L: 19065589-19065654 [-] UCSC Ensembl
Mir-2-P4a-v2 2L: 19065589-19065654 [-] UCSC Ensembl
Mir-2-P3b 2L: 19065872-19065940 [-] UCSC Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

UCGUCGAAUCGAAACAGGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUGCUCAAGGCAAAAAAAAAAAAAU

Get precursor sequence

Structure

        10          20        30        40         50        60   
UCGUCGAAUCGAAACAG--   A        A          -|        A   UUUGCCUUU 
                   GAG AUUGUGUC UUCUUCAAAG UGGUUGUGA AUG         U
                   CUC UAGCGCAG GAGGAGUUUC ACCGACACU UAC         U
UAAAAAAAAAAAAACGGAA   G        C          G^        A   UUAUCCGUA 
       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

He	Wh

Star sequence

Dsi-Mir-2-P3b_5p*

mirBase accession

None

Sequence

0- UUCUUCAAAGUGGUUGUGAAAUG -23

Get sequence

Mature sequence

Dsi-Mir-2-P3b_3p

mirBase accession

MIMAT0008858

Sequence

45- UAUCACAGCCAGCUUUGAGGAGCG -69

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