| MirGeneDB ID | Npo-Mir-2-o47 |
|---|---|
| Family name | MIR-2 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-2-o45 Npo-Mir-2-o48a Npo-Mir-2-o48b Npo-Mir-2-o49 Npo-Mir-2-P12 |
| Orthologues | Esc-Mir-2-o47a-v1 Esc-Mir-2-o47b Esc-Mir-2-o47c Esc-Mir-2-o47d Gsp-Mir-2 Obi-Mir-2-o47a Obi-Mir-2-o47b Obi-Mir-2-o47c Obi-Mir-2-o47d Ovu-Mir-2-o47a Ovu-Mir-2-o47b Ovu-Mir-2-o47c Ovu-Mir-2-o47d Ple-Mir-2 |
| Node of Origin (locus) | Cephalopoda |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409822-409878 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-2-o47) |
Mir-71
JACATO010000013.1: 409153-409211 [+]
Ensembl
Mir-2-o45 JACATO010000013.1: 409573-409634 [+] Ensembl Mir-2-P12 JACATO010000013.1: 409697-409758 [+] Ensembl Mir-2-o47 JACATO010000013.1: 409822-409878 [+] Ensembl Mir-2-o48a JACATO010000013.1: 410153-410212 [+] Ensembl Mir-2-o48b JACATO010000013.1: 410351-410409 [+] Ensembl Mir-2-o49 JACATO010000013.1: 410469-410530 [+] Ensembl |
| Seed | CACAGCC |
| Precursor (pre-Mir +30nt flank) |
GAGGCUGGGGAUUCAUUCGCCUCGCUGCAGAUCGUCAAGGUGGUUGUGACGUGUUGAGCCUCAUAUCACAGCCAGCUUUGAUGAGCUGGAGUGGUGUUGCAAACUGCAUUCUCUUUGGet precursor sequence |
| Structure | 10 20 30 40 50 GAGGCUGGGGAUUCAUU----| UC G A - CG GUUG CGCC GCU CAG UCGUCAAGG UGGUUGUGA U A GUGG UGA GUC AGUAGUUUC ACCGACACU A G GUUUCUCUUACGUCAAACGUU^ -- G G G AU CUCC 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-2-o47_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AUCGUCAAGGUGGUUGUGACGUG -23
Get sequence
|
| Mature sequence | Npo-Mir-2-o47_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- UCACAGCCAGCUUUGAUGAGCU -57
Get sequence
|
