| MirGeneDB ID | Npo-Mir-2-o48a |
|---|---|
| Family name | MIR-2 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-2-o45 Npo-Mir-2-o47 Npo-Mir-2-o48b Npo-Mir-2-o49 Npo-Mir-2-P12 |
| Orthologues | Esc-Mir-2-o48-v1 Gsp-Mir-2 Obi-Mir-2-o48-v1 Ovu-Mir-2-o48-v1 Ple-Mir-2 |
| Node of Origin (locus) | N. pompilius |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 410153-410212 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-2-o48a) |
Mir-71
JACATO010000013.1: 409153-409211 [+]
Ensembl
Mir-2-o45 JACATO010000013.1: 409573-409634 [+] Ensembl Mir-2-P12 JACATO010000013.1: 409697-409758 [+] Ensembl Mir-2-o47 JACATO010000013.1: 409822-409878 [+] Ensembl Mir-2-o48a JACATO010000013.1: 410153-410212 [+] Ensembl Mir-2-o48b JACATO010000013.1: 410351-410409 [+] Ensembl Mir-2-o49 JACATO010000013.1: 410469-410530 [+] Ensembl |
| Seed | AUCACAG |
| Precursor (pre-Mir +30nt flank) |
CUGGAAGGGAAAAGUUGUUGCUGGAUUGAGGGCAUCAAAGUGGUGGUGAAAUGUUACCGCCUGUCAUAUCACAGCCAACUUUGAUGAGCUUUGAUUCGGUGCUGCUCGUCUACAGGAACUGet precursor sequence |
| Structure | 10 20 30 40 50 CUGGAAGGGAAAAGUUGUU- UG G- -| G A UUACC GCUGGAU AGG CAUCAAAG UGGU GUGA AUG \ UGGCUUA UUC GUAGUUUC ACCG CACU UAC G UCAAGGACAUCUGCUCGUCG GU GA A^ A A UGUCC . 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-2-o48a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGCAUCAAAGUGGUGGUGAAAUG -23
Get sequence
|
| Mature sequence | Npo-Mir-2-o48a_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- UAUCACAGCCAACUUUGAUGAGCU -60
Get sequence
|
