Mir-4983

MirGeneDB ID

Dme-Mir-4983

Family name

MIR-4983 (all species)

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-4983

Paralogues

Orthologues

Dsi-Mir-4983

Node of Origin (locus)

D. melanogaster + D. simulans

Node of Origin (family)

D. melanogaster + D. simulans

Genome context
(Drosophila_melanogaster_BDGP6)

2R: 19637431-19637502 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-4983)

Mir-4983 2R: 19637431-19637502 [+] UCSC Ensembl
Mir-2-P6c 2R: 19660722-19660787 [-] UCSC Ensembl
Mir-2-P6b 2R: 19660874-19660935 [-] UCSC Ensembl
Mir-2-P6a 2R: 19661012-19661074 [-] UCSC Ensembl
Mir-2-P5 2R: 19661162-19661222 [-] UCSC Ensembl
Mir-9-P9 2R: 19661300-19661356 [-] UCSC Ensembl
Mir-279-P1 2R: 19661435-19661509 [-] UCSC Ensembl
Mir-3-P2 2R: 19661600-19661656 [-] UCSC Ensembl
Mir-3-P1 2R: 19661710-19661768 [-] UCSC Ensembl

Seed

AAAUUCU

Precursor
(pre-Mir +30nt flank)

ACAUCUGCCCGCUGGCUGGCUGUCUUGACCCACUUGCUCGUUUGCAUUUCUGAAAAAUGUAUACGCAAAAACCAAAAUCAGAAAUUCUUUUGAGCAAGUGUGUCAUGAAAUUGCCAUUCGUUUCUGCUCUAU

Get precursor sequence

Structure

        10        20          30        40        50        60     
ACAUCUGCCCGCUGGCUG  UG--| U    C          UUUGC       AAAAAUGUAUAC 
                  GC    UC UGAC CACUUGCUCG     AUUUCUG            G
                  CG    AG ACUG GUGAACGAGU     UAAAGAC            C
UAUCUCGUCUUUGCUUAC  UUAA^ U    U          UUUCU       UAAAACCAAAAA 
130       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-4983_5p*

mirBase accession

MIMAT0020217

Sequence

0- CACUUGCUCGUUUGCAUUUCUG -22

Get sequence

Mature sequence

Dme-Mir-4983_3p

mirBase accession

MIMAT0020218

Sequence

50- GAAAUUCUUUUGAGCAAGUGUG -72

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