| MirGeneDB ID | Asu-Mir-36-o27 |
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| Family name |
MIR-36 (all species) |
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| Seed |
CACCGGG |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-36a
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| Paralogues |
Asu-Mir-36-o28
Asu-Mir-36-o29-v1
Asu-Mir-36-o29-v2
Asu-Mir-36-o30
Asu-Mir-36-o31
Asu-Mir-36-o32
|
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| Orthologues |
Bge-Mir-36
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Tca-Mir-36
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| Node of Origin (locus) |
A. suum
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| Node of Origin (family) |
Protostomia
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold561: 396486-396545 [-]
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Precursor
(pre-Mir +30nt flank) |
AGCCAGUUGUUUCGCCUGAGUACGGUGUGUAGUGGAUGUACCCUCGGUUCGAUGUUUCUUUACUAUCAUCACCGGGUAUACAUUCAUCAAAUACCGUAGCUCAGUACAGUAGGCAGAACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGCCAGUUGUUUCGCCU- -| GUA CC UC UUUCU
GAG UACGGUGU GUGGAUGUA CUCGGU GAUG U
CUC AUGCCAUA UACUUACAU GGGCCA CUAC U
CCAAGACGGAUGACAUGA G^ AAC AU -- UAUCA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-36-o27_5p* |
| mirBase accession | MIMAT0021439 |
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| Sequence |
0- AGUGGAUGUACCCUCGGUUCGAUG -24
Get sequence
|
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| Mature sequence |
Asu-Mir-36-o27_3p |
| mirBase accession | MIMAT0021440 |
|---|
| Sequence |
38- UCACCGGGUAUACAUUCAUCAA -60
Get sequence
|
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