Mir-36-o29-v1

MirGeneDB ID

Asu-Mir-36-o29

Family name

MIR-36 (all species)

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-36c

Paralogues

Asu-Mir-36-o27 Asu-Mir-36-o28 Asu-Mir-36-o30 Asu-Mir-36-o31 Asu-Mir-36-o32

Orthologues

Agr-Mir-36 Ava-Mir-36-P29a Ava-Mir-36-P29b Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

A.suum

Node of Origin (family)

Protostomia

Genome context
(ASU_PRJNA80881_plustraces)

trace_ANBK02000028: 101-160 [+]

Clustered miRNAs
(< 50kb from Mir-36-o29-v1)

Mir-36-o29-v1 trace_ANBK02000028: 101-160 [+]
Mir-36-o29-v2 trace_ANBK02000028: 101-160 [+]

Variant

Asu-Mir-36-o29-v1

Seed

CACCGGG

Precursor
(pre-Mir +30nt flank)

GUUACCUGAAAUGGCAGCGAUGUGACGUGACGGGGAUUCUACUUUUGGUGAAGCGAGCUCAGAUGACUUCACCGGGCUCGAAUCCCUGUCCUGUCAUGAUUCAUGUGCUCAGUUCCACCU

Get precursor sequence

Structure

        10        20          30        40        50          
GUUACCUGAAAUGGCAGCGAU--|     U           UACU          CGAGCU 
                       GUGACG GACGGGGAUUC    UUUGGUGAAG      \
                       UACUGU CUGUCCCUAAG    GGGCCACUUC      C
UCCACCUUGACUCGUGUACUUAG^     C           CUC-          AGUAGA 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ce	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	La	Ov	Se	Sp	Te	Zy

Star sequence

Asu-Mir-36-o29-v1_5p*

mirBase accession

MIMAT0021443

Sequence

0- CGGGGAUUCUACUUUUGGUGAAG -23

Get sequence

Mature sequence

Asu-Mir-36-o29-v1_3p