MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-36-o39

Family name MIR-36 (all species)
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-36
Paralogues Gsa-Mir-36-o38 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) G. salaris
Node of Origin (family) Protostomia
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006952682: 32348-32411 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-o39)		 Mir-36-o39 scf7180006952682: 32348-32411 [-] UCSC Ensembl
Mir-36-o38 scf7180006952682: 33007-33101 [-] UCSC Ensembl
Seed CACCGGG
Precursor
(pre-Mir +30nt flank)		 
UGGAUUGGAAUGAAUUAUCUCUUGGUCAGUGGGAGAAUGAUUAUCACGGUUUUCAGGAUCAUUAAAAUAGAUCACCGGGUCAUCAUUCAUCCACAGACUUGGGAAGGGACGGCCGCAAUUUAAA
Get precursor sequence
Structure
        10           20        30        40        50        60  
UGGAUUGGAAUGAAUUA---|   UU    A    GA       U   A    UU  AGGAUCA 
                    UCUC  GGUC GUGG  GAAUGAU AUC CGGU  UC       \
                    AGGG  UCAG CACC  CUUACUA UGG GCCA  AG       U
AAAUUUAACGCCGGCAGGGA^   U-    A    UA       C   -    CU  AUAAAAU 
  120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gsa-Mir-36-o39_5p*
mirBase accessionMIMAT0035258
Sequence 
0- GGGAGAAUGAUUAUCACGGUUUUC -24
Get sequence
Mature sequence

Gsa-Mir-36-o39_3p
mirBase accessionMIMAT0035259
Sequence 
41- UCACCGGGUCAUCAUUCAUCCAC -64
Get sequence