Mir-36-P5

MirGeneDB ID

Cel-Mir-36-P5

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-39

Paralogues

Cel-Mir-36-P1 Cel-Mir-36-P2 Cel-Mir-36-P3 Cel-Mir-36-P4 Cel-Mir-36-P6 Cel-Mir-36-P7 Cel-Mir-36-P8

Orthologues

Bge-Mir-36 Cbr-Mir-36-o5 Cgi-Mir-36 Cte-Mir-36 Dma-Mir-36 Dpu-Mir-36 Isc-Mir-36 Npo-Mir-36 Tca-Mir-36

Node of Origin (locus)

C. elegans

Node of Origin (family)

Protostomia

Genome context
(ce11)

chrII: 11538103-11538164 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-36-P5)

Mir-36-P1 chrII: 11537629-11537689 [+] UCSC Ensembl
Mir-36-P2 chrII: 11537732-11537794 [+] UCSC Ensembl
Mir-36-P3 chrII: 11537854-11537914 [+] UCSC Ensembl
Mir-36-P4 chrII: 11537949-11538011 [+] UCSC Ensembl
Mir-36-P5 chrII: 11538103-11538164 [+] UCSC Ensembl
Mir-36-P6 chrII: 11538199-11538260 [+] UCSC Ensembl
Mir-36-P7 chrII: 11538324-11538389 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUAUUGAAUUCCUGAUAUACCGAGAGCCCAGCUGAUUUCGUCUUGGUAAUAAGCUCGUCAUUGAGAUUAUCACCGGGUGUAAAUCAGCUUGGCUCUGGUGUCUCCGAACCUCCUGUCCGCA

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Structure

        10           20        30         40        50        60
AUUAUUGAAUUCCUGAU---|    G      C         -  U      A   AGCUCGU 
                    AUACC AGAGCC AGCUGAUUU CG CUUGGU AUA       C
                    UGUGG UCUCGG UCGACUAAA GU GGGCCA UAU       A
ACGCCUGUCCUCCAAGCCUC^    -      U         U  -      C   UAGAGUU 
120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Wt	Da	Ea	Mi	Yo	Yo

Star sequence

Cel-Mir-36-P5_5p*

mirBase accession

MIMAT0020306

Sequence

0- AGCUGAUUUCGUCUUGGUAAUA -22

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Mature sequence

Cel-Mir-36-P5_3p

mirBase accession

MIMAT0000010

Sequence

40- UCACCGGGUGUAAAUCAGCUUG -62

Get sequence

Proposed targets

microrna.org: MIMAT0000010
TargetScanWorm: cel-miR-39