MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-36-P18a

Family name MIR-36 (all species)
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues Bko-Mir-36-P16a  Bko-Mir-36-P16b  Bko-Mir-36-P18b 
Orthologues Agr-Mir-36  Bge-Mir-36  Bpl-Mir-36-P18  Cbr-Mir-36-o18  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) B. koreanus
Node of Origin (family) Protostomia
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic)		 PJRA01000036.1: 34336-34397 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P18a)		 Mir-36-P16a PJRA01000036.1: 34094-34149 [+] Ensembl
Mir-36-P18a PJRA01000036.1: 34336-34397 [+] Ensembl
Seed CACCGGG
Precursor
(pre-Mir +30nt flank)		 
AAUGUAUCUAAUCAGUCUUGAUGCUCGUUCAGCAAGUGUAGCCUGAGUUAUGUGGUUUAGCUUUUUCAUCACCGGGUUUUCACACUUGCCAAACGAAAUUGAGCUAUGUCAAUUUAAAUUAA
Get precursor sequence
Structure
        10           20        30           40        50         
AAUGUAUCUAAUCAGUC--- UG  GC     CA        ---|     A  U   UGGUUU 
                    U  AU  UCGUU  GCAAGUGU   AGCCUG GU AUG      A
                    A  UA  AGCAA  CGUUCACA   UUGGGC CA UAC      G
AAUUAAAUUUAACUGUAUCG GU  A-     AC        CUU^     -  C   UUUUUC 
120       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To To To
Star sequence

Bko-Mir-36-P18a_5p*
mirBase accessionNone
Sequence 
0- AGCAAGUGUAGCCUGAGUUAUG -22
Get sequence
Mature sequence

Bko-Mir-36-P18a_3p
mirBase accessionNone
Sequence 
38- UCACCGGGUUUUCACACUUGCCAA -62
Get sequence