MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-36-o35

Family name MIR-36 (all species)
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-36b
Paralogues Sma-Mir-36-o33  Sma-Mir-36-o34 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  Tur-Mir-36-P35  War-Mir-36 
Node of Origin (locus) S. mansoni
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601624.3: 72204878-72204977 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-o35)		 Mir-36-o34 HE601624.3: 72169272-72169343 [-] UCSC Ensembl
Mir-36-o35 HE601624.3: 72204878-72204977 [-] UCSC Ensembl
Seed CACCGGG
Precursor
(pre-Mir +30nt flank)		 
UGUAUCGUUCUAAAUAAAAGCAGCAUCUGAAGGGAAUGUCUGUUCGGUUUGUGUCAUCGUGGUUACUUGUUAGGUACUACUUAAUAAUGUAACUAUUUUUCAGUACACCACCGGGUAGACAUUCAUCCGCAGAUGUCUUGCUGUAAACUUCUUUAUAGAC
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Structure
        10        20          30         40        50        60        70         
UGUAUCGUUCUAAAUAAA    --       AAGG-|        UU    UU   UCAUCGUGGUUACUUGUUAGGUACU 
                  AGCA  GCAUCUG     GAAUGUCUG  CGGU  GUG                         A
                  UCGU  UGUAGAC     CUUACAGAU  GCCA  CAC                         C
CAGAUAUUUCUUCAAAUG    UC       GCCUA^        GG    C-   AUGACUUUUUAUCAAUGUAAUAAUU 
.       150       140       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Star sequence

Sma-Mir-36-o35_5p*
mirBase accessionMIMAT0033514
Sequence 
0- AGGGAAUGUCUGUUCGGUUUGUG -23
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Mature sequence

Sma-Mir-36-o35_3p
mirBase accessionMIMAT0033515
Sequence 
77- CCACCGGGUAGACAUUCAUCCGC -100
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