MirGeneDB 2.1

MirGeneDB ID

Bpl-Mir-36-P17

Family name MIR-36 (all species)
Seed CACCGGG
Species Rotifer (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-36-P18  Bpl-Mir-36-P19 
Orthologues Bge-Mir-36  Cbr-Mir-36-o17  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) B. plicatilis
Node of Origin (family) Protostomia
Genome context
(Bpl_ASM1027981)
QEOQ01000180.1: 141578-141633 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAAUGAAUGAAUAGGCGCAUUGAUUAGUGUCGAGUGAUGACCCAGGUUAUGACGAGAUAUCAUCACCGGGUCUACACUUGCCACUAAUCUCGCUUUCAAUAGCAUCCAACGCAG
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Structure
        10           20        30        40        50        
UCAAAUGAAUGAAUAGGC---| AUU        U      AU     A   U   ACGA 
                     GC   GAUUAGUG CGAGUG  GACCC GGU AUG    \
                     CG   CUAAUCAC GUUCAC  CUGGG CCA UAC    G
GACGCAACCUACGAUAACUUU^ CU-        C      AU     -   C   UAUA 
    110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Bpl-Mir-36-P17_5p* (predicted)

mirBase accessionNone
Sequence
0- GUCGAGUGAUGACCCAGGUUAUG -23
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Mature sequence

Bpl-Mir-36-P17_3p

mirBase accessionNone
Sequence
34- UCACCGGGUCUACACUUGCCAC -56
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