MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-210

Family name MIR-210 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-210-v1  Aca-Mir-210  Aga-Mir-210-v1  Agr-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bge-Mir-210-v1  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cja-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Dan-Mir-210-v1  Dgr-Mir-210  Dlo-Mir-210-v1  Dma-Mir-210  Dme-Mir-210-v1  Dmo-Mir-210-v1  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Dsi-Mir-210-v1  Dya-Mir-210-v1  Eba-Mir-210  Ebu-Mir-210  Eca-Mir-210  Egr-Mir-210  Ete-Mir-210  Gga-Mir-210  Gja-Mir-210  Gmo-Mir-210  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Lhy-Mir-210  Llo-Mir-210  Loc-Mir-210  Mal-Mir-210  Mdo-Mir-210  Mgi-Mir-210  Mml-Mir-210  Mmr-Mir-210  Mmu-Mir-210  Mom-Mir-210  Mun-Mir-210  Neu-Mir-210  Npo-Mir-210  Oan-Mir-210  Ocu-Mir-210  Ofu-Mir-210  Pab-Mir-210  Pau-Mir-210  Pbv-Mir-210  Pca-Mir-210  Pma-Mir-210  Pmi-Mir-210-v1  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Sma-Mir-210  Snu-Mir-210  Spt-Mir-210  Spu-Mir-210-v1  Tca-Mir-210-v1  Tgu-Mir-210  Tni-Mir-210  War-Mir-210  Xtr-Mir-210 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GpalI1)		 Scaffold150: 167190-167247 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-210-v1)		 Mir-210-v1 Scaffold150: 167190-167247 [+] Ensembl
Mir-210-v2 Scaffold150: 167190-167247 [+] Ensembl
Variant

Gpa-Mir-210-v1
Seed UGUGCGU
Precursor
(pre-Mir +30nt flank)		 
CCACUACUGUUGCGCUCUAGUUCUUAUUGCAGCUGCUGGCCACUGCACAAGAUUAGAUUAUGACUCUUGUGCGUGUGACAGCGGCUAUUGUGAGAUACUAAACUCAUCACACACAGGA
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Structure
        10         20         30        40         50        
CCACUACUGUUGCGCUC-    -|     UGC        GC   -         UUAGA 
                  UAGU UCUUAU   AGCUGCUG  CAC UGCACAAGA     U
                  AUCA AGAGUG   UCGGCGAC  GUG GCGUGUUCU     U
AGGACACACACUACUCAA    U^     UUA        A-   U         CAGUA 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-210-v1_5p*
mirBase accessionNone
Sequence 
0- AGCUGCUGGCCACUGCACAAGA -22
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Mature sequence

Gpa-Mir-210-v1_3p
mirBase accessionNone
Sequence 
36- UUGUGCGUGUGACAGCGGCUAU -58
Get sequence
Variant

Gpa-Mir-210-v2
Seed UUGUGCG
Precursor
(pre-Mir +30nt flank)		 
CCACUACUGUUGCGCUCUAGUUCUUAUUGCAGCUGCUGGCCACUGCACAAGAUUAGAUUAUGACUCUUGUGCGUGUGACAGCGGCUAUUGUGAGAUACUAAACUCAUCACACACAGGA
Get precursor sequence
Structure
        10         20         30        40         50        
CCACUACUGUUGCGCUC-    -|     UGC        GC   -         UUAGA 
                  UAGU UCUUAU   AGCUGCUG  CAC UGCACAAGA     U
                  AUCA AGAGUG   UCGGCGAC  GUG GCGUGUUCU     U
AGGACACACACUACUCAA    U^     UUA        A-   U         CAGUA 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-210-v2_5p*
mirBase accessionNone
Sequence 
0- AGCUGCUGGCCACUGCACAAGAU -23
Get sequence
Mature sequence

Gpa-Mir-210-v2_3p
mirBase accessionNone
Sequence 
35- CUUGUGCGUGUGACAGCGGCUAU -58
Get sequence