MirGeneDB 3.0
MirGeneDB ID

Pmi-Mir-210

Family name MIR-210 (all species)
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-210
Paralogues
Orthologues Aae-Mir-210-v1  Aca-Mir-210  Aga-Mir-210-v1  Agr-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bge-Mir-210-v1  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cja-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Dan-Mir-210-v1  Dgr-Mir-210  Dlo-Mir-210-v1  Dma-Mir-210  Dme-Mir-210-v1  Dmo-Mir-210-v1  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Dsi-Mir-210-v1  Dya-Mir-210-v1  Eba-Mir-210  Ebu-Mir-210  Eca-Mir-210  Egr-Mir-210  Ete-Mir-210  Gga-Mir-210  Gja-Mir-210  Gmo-Mir-210  Gpa-Mir-210-v1  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Lhy-Mir-210  Llo-Mir-210  Loc-Mir-210  Mal-Mir-210  Mdo-Mir-210  Mgi-Mir-210  Mml-Mir-210  Mmr-Mir-210  Mmu-Mir-210  Mom-Mir-210  Mun-Mir-210  Neu-Mir-210  Npo-Mir-210  Oan-Mir-210  Ocu-Mir-210  Ofu-Mir-210  Pab-Mir-210  Pau-Mir-210  Pbv-Mir-210  Pca-Mir-210  Pma-Mir-210  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Sma-Mir-210  Snu-Mir-210  Spt-Mir-210  Spu-Mir-210-v1  Tca-Mir-210-v1  Tgu-Mir-210  Tni-Mir-210  War-Mir-210  Xtr-Mir-210 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pmin1)		 JH770142.1: 76062-76127 [+]
Clustered miRNAs
(< 50kb from Mir-210-v1)		 Mir-210-v1 JH770142.1: 76062-76127 [+]
Mir-210-v2 JH770142.1: 76062-76127 [+]
Variant

Pmi-Mir-210-v1
Seed UGUGCGU
Precursor
(pre-Mir +30nt flank)		 
GCGCGAGCCCCGCCGAGUGCUGUGGACAUAAGUCACUGUCACGCGGCGCAAAGAGUGCUUCUCCGUCAAUUCUCUUGUGCGUGCGACAGCGACUGAUGUGUGCCGGCAAAAUUCAUCCAAAUAUCU
Get precursor sequence
Structure
        10         20         30        40        50        60   
GCGCGAGCCCCGCCGAG-    -|  G    A    A     A    G     A  GUGCUUCU 
                  UGCU GUG ACAU AGUC CUGUC CGCG CGCAA GA        C
                  ACGG CGU UGUA UCAG GACAG GUGC GUGUU CU        C
UCUAUAAACCUACUUAAA    C^  G    G    C     C    -     -  CUUAACUG 
    120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Em To
Star sequence

Pmi-Mir-210-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUCACUGUCACGCGGCGCAAAGA -24
Get sequence
Mature sequence

Pmi-Mir-210-v1_3p
mirBase accessionMIMAT0032167
Sequence 
44- UUGUGCGUGCGACAGCGACUGA -66
Get sequence
Variant

Pmi-Mir-210-v2
Seed UUGUGCG
Precursor
(pre-Mir +30nt flank)		 
GCGCGAGCCCCGCCGAGUGCUGUGGACAUAAGUCACUGUCACGCGGCGCAAAGAGUGCUUCUCCGUCAAUUCUCUUGUGCGUGCGACAGCGACUGAUGUGUGCCGGCAAAAUUCAUCCAAAUAUCU
Get precursor sequence
Structure
        10         20         30        40        50        60   
GCGCGAGCCCCGCCGAG-    -|  G    A    A     A    G     A   UGCUUCU 
                  UGCU GUG ACAU AGUC CUGUC CGCG CGCAA GAG       C
                  ACGG CGU UGUA UCAG GACAG GUGC GUGUU CUC       C
UCUAUAAACCUACUUAAA    C^  G    G    C     C    -     -   UUAACUG 
    120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em To
Star sequence

Pmi-Mir-210-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUCACUGUCACGCGGCGCAAAGAG -25
Get sequence
Mature sequence

Pmi-Mir-210-v2_3p
mirBase accessionMIMAT0032167
Sequence 
43- CUUGUGCGUGCGACAGCGACUGA -66
Get sequence