| MirGeneDB ID | Gpa-Mir-971 |
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| Family name |
MIR-971 (all species) |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aae-Mir-971
Aga-Mir-971
Bge-Mir-971-v1
Dan-Mir-971
Dlo-Mir-971
Dme-Mir-971
Dmo-Mir-971
Dsi-Mir-971
Dya-Mir-971
Hme-Mir-971
Tca-Mir-971
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| Node of Origin (locus) |
Neoptera
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| Node of Origin (family) |
Neoptera
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Genome context
(GpalI1) |
Scaffold16: 347672-347733 [+]
Ensembl
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| Seed |
UGGUGUU |
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Precursor
(pre-Mir +30nt flank) |
AUUAAUCGCACCAUAAUAACUUUGUUAUUCGCUGUAAGAUGGUAACAACAAAGCUGAGUUAUGUUAUUGCUUGGUGUUACUUCUUACAGUGAUUGCCAAAGUACAAUAACCUCAACUUUUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUUAAUCGCACCAUAAUA--| U U U ACA UGAGUU
ACUUUG UA UCGCUGUAAGA GGUAACA AAGC A
UGAAAC GU AGUGACAUUCU UCAUUGU UUCG U
CUUUUUCAACUCCAAUAACA^ C U - GG- UUAUUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Gpa-Mir-971_5p* |
| mirBase accession | None |
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| Sequence |
0- GCUGUAAGAUGGUAACAACAAAGC -24
Get sequence
|
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| Mature sequence |
Gpa-Mir-971_3p |
| mirBase accession | None |
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| Sequence |
40- UUGGUGUUACUUCUUACAGUGA -62
Get sequence
|
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