MirGeneDB 2.1

MirGeneDB ID

Aae-Mir-971

Family name MIR-971 (all species)
Seed UGGUGUU
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID
Paralogues
Orthologues Bge-Mir-971-v1  Bge-Mir-971-v2  Dan-Mir-971  Dme-Mir-971  Dmo-Mir-971  Dsi-Mir-971  Dya-Mir-971  Hme-Mir-971  Tca-Mir-971 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Aaeg_L3)
supercont1.141: 748863-748925 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAGAAAACUUUGGCCCUGCAGUUCGGCUGGCUGUAAGUAUUACAGCAAGCUUGCUAUUCGAAAGGCGCUUGGUGUUAUAUCUUACAGUGAGCUGAGUCGUGGCAGAAUGCAACCCUUUUUC
Get precursor sequence
Structure
        10          20        30         40        50        60
GGGAGAAAACUUUGGCC-- UG AG       G        -|  U   G     UUGCUAU 
                   C  C  UUCGGCU GCUGUAAG UAU ACA CAAGC       U
                   G  G  GAGUCGA UGACAUUC AUA UGU GUUCG       C
CUUUUUCCCAACGUAAGAC GU CU       G        U^  U   G     CGGAAAG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe To To To
Star sequence

Aae-Mir-971_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCUGUAAGUAUUACAGCAAGC -22
Get sequence
Mature sequence

Aae-Mir-971_3p

mirBase accessionNone
Sequence
40- UUGGUGUUAUAUCUUACAGUGAG -63
Get sequence