| MirGeneDB ID | Tca-Mir-971 |
|---|
| Family name |
MIR-971 (all species) |
|---|
| Species |
Red flour beetle (Tribolium castaneum) |
|---|
| MiRBase ID |
tca-mir-971b
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-971
Aga-Mir-971
Bge-Mir-971-v1
Dan-Mir-971
Dlo-Mir-971
Dme-Mir-971
Dmo-Mir-971
Dsi-Mir-971
Dya-Mir-971
Gpa-Mir-971
Hme-Mir-971
|
|---|
| Node of Origin (locus) |
Neoptera
|
|---|
| Node of Origin (family) |
Neoptera
|
|---|
Genome context
(Tcas5.2) |
LG4: 238976-239037 [+]
Ensembl
|
|---|
| Seed |
CACUCUA |
|---|
Precursor
(pre-Mir +30nt flank) |
ACCACCGAGCUUUGAGUGUGUAUAGUCGGGUCACUCUAAGUUUGAACACCAAGCUACAUUUAGCUCGUUUGGUGUUCUACCUUACAGUGAGCGGACUGUACACCAAAUCAUCACUUCGCAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACCACCGAGCUUUGAGU--| GGG C UUU UACAU
GUGUAUAGUC UCACU UAAG GAACACCAAGC U
CACAUGUCAG AGUGA AUUC CUUGUGGUUUG U
GAACGCUUCACUACUAAAC^ GCG C CAU CUCGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Tca-Mir-971_5p |
| mirBase accession | MIMAT0045561 |
|---|
| Sequence |
0- UCACUCUAAGUUUGAACACCAAGC -24
Get sequence
|
|---|
| Co-mature sequence |
Tca-Mir-971_3p |
| mirBase accession | MIMAT0045562 |
|---|
| Sequence |
38- UUGGUGUUCUACCUUACAGUGAGC -62
Get sequence
|
|---|
