| MirGeneDB ID | Gpa-Novel-3 |
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| Family name |
GPA-NOVEL-3 (all species) |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. pallidipes
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| Node of Origin (family) |
G. pallidipes
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Genome context
(GpalI1) |
Scaffold55: 42450-42510 [-]
Ensembl
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| Seed |
GAUCUUC |
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Precursor
(pre-Mir +30nt flank) |
UGGCGAAAAAUUGAAAAUUUUCCUUCUUAACGAUCUUCAAAAUGAAUUUUCGUAGAUUUUAACUAUCGGAAAAUUCAUUUUGAAUAUUGUUAAGCGUGAAAAACUAAACAACUACAACGGA
Get precursor sequence
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| Structure | 10 20 30 40 50
UGGCGAAAAAUUGAAAA--| CUU C GUAGAUUU
UUUUC CUUAACGAU UUCAAAAUGAAUUUUC \
AAAAG GAAUUGUUA AAGUUUUACUUAAAAG U
AGGCAACAUCAACAAAUCA^ UGC U GCUAUCAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gpa-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- CGAUCUUCAAAAUGAAUUUUCG -22
Get sequence
|
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| Co-mature sequence |
Gpa-Novel-3_3p |
| mirBase accession | None |
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| Sequence |
39- AAAAUUCAUUUUGAAUAUUGUU -61
Get sequence
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