| MirGeneDB ID | Gpa-Mir-316 |
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| Family name |
MIR-316 (all species) |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aae-Mir-316
Aga-Mir-316
Bge-Mir-316
Dan-Mir-316
Dme-Mir-316
Dmo-Mir-316
Dsi-Mir-316
Dya-Mir-316
Hme-Mir-316
Tca-Mir-316
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| Node of Origin (locus) |
Pancrustacea
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| Node of Origin (family) |
Pancrustacea
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Genome context
(GpalI1) |
Scaffold164: 76840-76898 [+]
Ensembl
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| Seed |
GUCUUUU |
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Precursor
(pre-Mir +30nt flank) |
ACGGCAAUGAUCGUUAAGUUCUAGUUGAUUUGUCUUUUUCCGCUUACUGCCGCUUAAUUUUGCGUCGACAGGAGAGGGAAAAAGACGUAUAAACUGGAAACUUUUUCAACGAUGUGAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACGGCAAUGAUCGUUAAG--| GAUU G A- C CUUAAU
UUCUAGUU UGUCUUUUUCC CUU CUG CG \
AAGGUCAA GCAGAAAAAGG GAG GAC GC U
UAAGUGUAGCAACUUUUUCA^ AUAU - AG A UGCGUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gpa-Mir-316_5p |
| mirBase accession | None |
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| Sequence |
0- UGUCUUUUUCCGCUUACUGCCG -22
Get sequence
|
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| Star sequence |
Gpa-Mir-316_3p* |
| mirBase accession | None |
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| Sequence |
37- ACAGGAGAGGGAAAAAGACGUA -59
Get sequence
|
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