| MirGeneDB ID | Aga-Mir-316 |
|---|
| Family name |
MIR-316 (all species) |
|---|
| Species |
African malaria mosquito (Anopheles gambiae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-316
Bge-Mir-316
Dan-Mir-316
Dme-Mir-316
Dmo-Mir-316
Dsi-Mir-316
Dya-Mir-316
Gpa-Mir-316
Hme-Mir-316
Tca-Mir-316
|
|---|
| Node of Origin (locus) |
Pancrustacea
|
|---|
| Node of Origin (family) |
Pancrustacea
|
|---|
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064602.1: 98412398-98412461 [-]
Ensembl
|
|---|
| Seed |
GUCUUUU |
|---|
Precursor
(pre-Mir +30nt flank) |
GUAAUCACCACAUCCGUCUUUCGACCGAUUUGUCUUUUCCUGCUUACUGCCGGUAGCAUUCGAUAUCCUUCGACAGCAAUCAGAAAAAGACGCCUCGGUUGGGAAGCAUCCGGCAACGAUCCGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUAAUCACCACAUCCGUC--|UU UU C C A C GUAGCAUU
U CGACCGA UGUCUUUU CUG UU CUG CG C
A GUUGGCU GCAGAAAA GAC AA GAC GC G
AGCCUAGCAACGGCCUACGA^GG CC A U C A UUCCUAUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ab |
Ab |
He |
He |
Mi |
Mi |
Ov |
Ov |
Ov |
| |
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Aga-Mir-316_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUCUUUUCCUGCUUACUGCCG -22
Get sequence
|
|---|
| Star sequence |
Aga-Mir-316_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- ACAGCAAUCAGAAAAAGACGCC -64
Get sequence
|
|---|
