MirGeneDB 3.0

MirGeneDB ID

Gpa-Mir-999

Family name MIR-999 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-999  Aga-Mir-999  Dan-Mir-999  Dme-Mir-999  Dmo-Mir-999  Dsi-Mir-999  Dya-Mir-999 
Node of Origin (locus) Diptera
Node of Origin (family) Diptera
Genome context
(GpalI1)
Scaffold168: 823176-823236 [+] Ensembl
Seed GUUAACU
Precursor
(pre-Mir +30nt flank)
GGAAAUGACAUUAUAAGCUCAUCUACUGUGACAUAGUCGUACAGAAAAUAUUGUGUUAUACGAGUCCAAUGUUAACUGUAAGACUGUGUCUUGGUGGCUUGAAAUAAACUUCGACACAAUG
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Structure
        10         20         30        40        50          
GGAAAUGACAUUAUAAGC-   U-|     U         G     AA      GUGUUAU 
                   UCA  CUACUG GACAUAGUC UACAG  AAUAUU       \
                   AGU  GGUGGU CUGUGUCAG AUGUC  UUGUAA       A
GUAACACAGCUUCAAAUAA   UC^     U         A     AA      CCUGAGC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
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Star sequence

Gpa-Mir-999_5p*

mirBase accessionNone
Sequence
0- ACAUAGUCGUACAGAAAAUAUU -22
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Mature sequence

Gpa-Mir-999_3p

mirBase accessionNone
Sequence
39- UGUUAACUGUAAGACUGUGUCU -61
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