MirGeneDB ID | Gpa-Mir-999 |
Family name |
MIR-999 (all species) |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-999
Aga-Mir-999
Dan-Mir-999
Dme-Mir-999
Dmo-Mir-999
Dsi-Mir-999
Dya-Mir-999
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Node of Origin (locus) |
Diptera
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Node of Origin (family) |
Diptera
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Genome context (GpalI1) |
Scaffold168: 823176-823236 [+]
Ensembl
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Seed |
GUUAACU |
Precursor (pre-Mir +30nt flank) |
GGAAAUGACAUUAUAAGCUCAUCUACUGUGACAUAGUCGUACAGAAAAUAUUGUGUUAUACGAGUCCAAUGUUAACUGUAAGACUGUGUCUUGGUGGCUUGAAAUAAACUUCGACACAAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAAAUGACAUUAUAAGC- U-| U G AA GUGUUAU
UCA CUACUG GACAUAGUC UACAG AAUAUU \
AGU GGUGGU CUGUGUCAG AUGUC UUGUAA A
GUAACACAGCUUCAAAUAA UC^ U A AA CCUGAGC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Star sequence |
Gpa-Mir-999_5p* |
mirBase accession | None |
Sequence |
0- ACAUAGUCGUACAGAAAAUAUU -22
Get sequence
|
Mature sequence |
Gpa-Mir-999_3p |
mirBase accession | None |
Sequence |
39- UGUUAACUGUAAGACUGUGUCU -61
Get sequence
|