MirGeneDB 2.1
MirGeneDB ID

Dme-Mir-999

Family name MIR-999 (all species)
Seed GUUAACU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-999
Paralogues
Orthologues Aae-Mir-999  Dan-Mir-999  Dmo-Mir-999  Dsi-Mir-999  Dya-Mir-999 
Node of Origin (locus) Diptera
Node of Origin (family) Diptera
Genome context
(Drosophila_melanogaster_BDGP6)		 3R: 21798249-21798308 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-999)		 Mir-999 3R: 21798249-21798308 [-] UCSC Ensembl
Mir-4969 3R: 21798535-21798651 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAAGAAAGGAUGCCGCUCAAUUACCCCGACAUAGUCAUACGGUGAAUGUUGUGUAUUGGAGACCAAUGUUAACUGUAAGACUGUGUCUCGGUGGUUGCCAGCCCAGCCACACAGCCCA
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Structure
        10          20        30        40        50         
GAGAAGAAAGGAUGCCGCU--|       CC         A      G      GUGUAU 
                     CAAUUACC  GACAUAGUC UACGGU AAUGUU      U
                     GUUGGUGG  CUGUGUCAG AUGUCA UUGUAA      G
ACCCGACACACCGACCCGACC^       CU         A      A      CCAGAG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo He L3 Fe Fe La Wh
Star sequence

Dme-Mir-999_5p*
mirBase accessionMIMAT0020899
Sequence 
0- ACAUAGUCAUACGGUGAAUGUU -22
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Mature sequence

Dme-Mir-999_3p
mirBase accessionMIMAT0005519
Sequence 
38- UGUUAACUGUAAGACUGUGUCU -60
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Proposed targets microrna.org: MIMAT0005519
TargetScanFly: dme-miR-999