MirGeneDB ID | Cbr-Mir-70 |
Family name |
MIR-70 (all species) |
Seed |
AAUACGU |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-70
|
Paralogues |
|
Orthologues |
Cel-Mir-70
|
Node of Origin (locus) |
Caenorhabditis
|
Node of Origin (family) |
Caenorhabditis
|
Genome context (CB4) |
V: 12360178-12360240 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUAUUAUUUUCAAAACGGAUGUAUCUCUAGGAACAGCCAUCAUGUAAGACAUUUCUAACUGAAAGAUGUAAUACGUGAUUGGUGUUCCCAGAGUUUACCGUUUCCUUCUUUUAUUUUUCCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUUAUUAUUUUCAAAA----| A UAU A G - AG UUUCUAA
CGG UG CUCU GGAACA CCA UCAUGUA ACA \
GCC AU GAGA CCUUGU GGU AGUGCAU UGU C
ACCUUUUUAUUUUCUUCCUUU^ - UU- C - U AA AGAAAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Cbr-Mir-70_5p* |
mirBase accession | None |
Sequence |
0- AGGAACAGCCAUCAUGUAAGACA -23
Get sequence
|
Mature sequence |
Cbr-Mir-70_3p |
mirBase accession | MIMAT0001300 |
Sequence |
40- UAAUACGUGAUUGGUGUUCCCAG -63
Get sequence
|