MirGeneDB ID | Cbr-Mir-87-o1 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-87
|
Paralogues |
Cbr-Mir-87-o2
|
Orthologues |
Bge-Mir-87-P1
Cel-Mir-87-o1
Cgi-Mir-87-P1
Csc-Mir-87-P1k1
Csc-Mir-87-P1k2
Csc-Mir-87-P1l
Cte-Mir-87-P1
Isc-Mir-87-P1
Lan-Mir-87-P1
Lgi-Mir-87-P1
Lpo-Mir-87-P1c
Lpo-Mir-87-P1d
Lpo-Mir-87-P1e
Lpo-Mir-87-P1f
Lpo-Mir-87-P1g
Lpo-Mir-87-P1h
Lpo-Mir-87-P1i
Lpo-Mir-87-P1j
Tca-Mir-87-P1
|
Node of Origin (locus) |
Caenorhabditis
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Node of Origin (family) |
Protostomia
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Genome context (CB4) |
V: 8974034-8974098 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAUUUCUCCACAGGUUGUGCCCACCCGGCCGCCUGAUACUUUCGUCUCAACCUCGCUGUCAGAAUGUCGUAGGUGAGCAAAGUUUCAGGUGUGCCGGAACACACCCAUACUUUGCUCUGUUGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAUUUCUCCACAGGUU-----| CCCAC - U C U A CGCUGUCA
GUG CCGGC CGCCUGA ACUUU G CUCA CCU \
CAC GGCCG GUGGACU UGAAA C GAGU GGA G
UUGUUGUCUCGUUUCAUACCCA^ AA--- U U - - - UGCUGUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | UG at 5p(-14) |
Tissue expression
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01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
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14 |
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16 |
Cb |
Ea |
Ma |
Yo |
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Star sequence |
Cbr-Mir-87-o1_5p* |
mirBase accession | None |
Sequence |
0- CGCCUGAUACUUUCGUCUCAACCU -24
Get sequence
|
Mature sequence |
Cbr-Mir-87-o1_3p |
mirBase accession | MIMAT0000492 |
Sequence |
43- GUGAGCAAAGUUUCAGGUGUGC -65
Get sequence
|