| MirGeneDB ID | Csc-Mir-87-P1l |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Arizona bark scorpion (Centruroides sculpturatus) |
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| MiRBase ID |
|
|---|
| Paralogues |
Csc-Mir-87-P1k1
Csc-Mir-87-P1k2
Csc-Mir-87-P2k
Csc-Mir-87-P2l
|
|---|
| Orthologues |
Bge-Mir-87-P1
Cbr-Mir-87-o1
Cel-Mir-87-o1
Cgi-Mir-87-P1
Cte-Mir-87-P1
Isc-Mir-87-P1
Lan-Mir-87-P1
Lgi-Mir-87-P1
Tca-Mir-87-P1
|
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| Node of Origin (locus) |
C. sculpturatus
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCF_000671375.1_CSC) |
NW_019384506.1: 706723-706782 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAAAUACUUUUCCAGUUGUGAAGUUCUGGCGAGCCCGGAACUUUGCCUCAACCUGACAAAACAGACAGGUGAGCAAAGUUUCAGGUGUGUUGGAUCUUCAAAUAGUCUCCAUUUUCUAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAAAUACUUUUCCAGUUG--| U UG A C C A GACAA
UGAAG UC GCG GCC GGAACUUUGC UCA CCU A
ACUUC AG UGU UGG CUUUGAAACG AGU GGA A
GUAUCUUUUACCUCUGAUAA^ U GU G A - - CAGAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Csc-Mir-87-P1l_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAGCCCGGAACUUUGCCUCAACCU -24
Get sequence
|
|---|
| Mature sequence |
Csc-Mir-87-P1l_3p |
| mirBase accession | None |
|---|
| Sequence |
38- GUGAGCAAAGUUUCAGGUGUGU -60
Get sequence
|
|---|
