MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-87-P1

Family name MIR-87 (all species)
Seed UGAGCAA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-87a
Paralogues Tca-Mir-87-P2 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Cgi-Mir-87-P1  Csc-Mir-87-P1k1  Csc-Mir-87-P1k2  Csc-Mir-87-P1l  Cte-Mir-87-P1  Isc-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Lpo-Mir-87-P1c  Lpo-Mir-87-P1d  Lpo-Mir-87-P1e  Lpo-Mir-87-P1f  Lpo-Mir-87-P1g  Lpo-Mir-87-P1h  Lpo-Mir-87-P1i  Lpo-Mir-87-P1j 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG6: 1499347-1499408 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-87-P1)		 Mir-87-P1 LG6: 1499347-1499408 [+] Ensembl
Mir-87-P2 LG6: 1502215-1502272 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAUGAUGGGAGGUUUGCCAGUCGUUGACGGGCUUGAAAUCUUGCUCUCCCGUGAUUAUUUCGUAAAGGGUGAGCAAAGUUUCAGGUGUGUCAAAGGCUUUGGAUACACAACGAUGGAAUA
Get precursor sequence
Structure
        10        20          30        40        50        60
UAGAUGAUGGGAGGUUUG  --|   G      G        UC      U   GUGAUUA 
                  CC  AGUC UUGACG GCUUGAAA  UUGCUC CCC       U
                  GG  UCGG AACUGU UGGACUUU  AACGAG GGG       U
AUAAGGUAGCAACACAUA  UU^   A      G        GA      U   AAAUGCU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere appears to be a second Drosha cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-87-P1_5p*
mirBase accessionMIMAT0019110
Sequence 
0- GGGCUUGAAAUCUUGCUCUCCC -22
Get sequence
Mature sequence

Tca-Mir-87-P1_3p
mirBase accessionMIMAT0008366
Sequence 
40- GUGAGCAAAGUUUCAGGUGUGU -62
Get sequence